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Table 2 LNA sequences

From: High genotypic diversity and a novel variant of human cytomegalovirus revealed by combined UL33/UL55 genotyping with broad-range PCR

LNA (name)

LNA (Sequence)$

Target DPOL sequence

Tm of DNA-oligomer#

Tm of LNA-oligomer#

LNA-HCMV-gB-1

5'-+c+c+a+a+a+c+c+a+c+c+a+g+t+g-NH2

HCMV gB-1

50

87

LNA-HCMV-gB-2

5'-+c+g+a+g+t+g+a+c+a+a+t+a+a+t+a+c-NH2

HCMV gB-2

45

80

LNA-HCMV-gB-3

5'-+c+g+a+c+c+a+c+c+c+t+g+t-NH2

HCMV gB-3

49

86

LNA-HCMV-gB-4

5'-+c+c+g+a+g+t+c+c+a+t+a+t+t+a+g-NH2

HCMV gB-4

45

85

LNA-HCMV-UL33-1/2

5'-+t+g+t+a+c+c+a+t+t+a+t+g+t+a+t+c-NH2

HCMV UL33-1/2

42

79

LNA-HCMV-UL33-3

5'-+a+a+t+c+a+t+a+c+c+g+t+t+c+a+a+c-NH2

HCMV UL33-3

47

80

LNA-HCMV-UL33-4

5'-+c+c+a+c+t+a+at+g+c+c+a+ct+g-NH2

HCMV UL33-4

50

80

  1. $All bases in LNA conformation are preceeded by +
  2. #Tm = melting point; calculated with the algorithm provided on the website http://lna-tm.com/