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Table 2 Sequence similarities (%) of the partial S and L segments of SWSV mp70 and SWSV strains from Sorex araneus sampled in Finland and Hungary.

From: Genetic diversity and phylogeography of Seewis virus in the Eurasian common shrew in Finland and Hungary

   

S segment

L segment

Country

District

SWSV strain

(nt)*

(aa)*

400 nt

133 aa

Finland

Etelä-Suomen Lääni

DGR18226

85.7 (928)

99.4 (308)

81.3

98.8

  

DGR18228

87.1 (616)

98.0 (204)

81.7

99.3

  

DGR18279

86.9 (616)

97.5 (204)

81.5

99.3

  

DGR18283

88.1 (328)

100 (108)

81.9

99.3

 

Lappi

DGR18207

81.5 (394)

93.9 (131)

80.1

97.8

 

Oulun Lääni

DGR18874

84.4 (394)

98.5 (131)

79.1

97.1

  

DGR18887

85.8 (616)

98.5 (204)

80.0

99.3

  

DGR18888

-

-

80.2

99.3

  

DGR18889

85.7 (612)

98.0 (203)

78.9

98.5

  

DGR18890

80.6 (250)

80.7 (83)

79.5

99.2

  

DGR18891

85.8 (616)

98.5 (204)

79.3

98.4

  

DGR18893

-

-

80.4

99.3

Hungary

Györ-Sopron-Moson

MSB95458

86.0 (336)

97.3 (111)

80.5

100.0

  

MSB95461

86.2 (327)

100 (108)

79.9

99.3

  

MSB95462

86.9 (639)

99.1 (212)

80.1

99.3

  

MSB95463

87.2 (1146)

99.5 (381)

79.5

100.0

  

MSB95464

86.4 (720)

98.2 (239)

80.5

100.0

  

MSB95467

-

-

78.2

98.6

  

MSB95468

87.2 (660)

99.5 (219)

78.9

100.0

  

MSB95471

-

-

80.1

100.0

  

MSB95475

-

-

80.6

100.0

  

MSB95480

85.6 (928)

99.4 (308)

79.5

99.3

 

Zala

MSB94609

85.2 (639)

97.2 (211)

80.9

97.0

  

MSB94615

85.7 (616)

97.7 (204)

81.1

99.3

  

MSB95322

-

-

81.3

99.3

  1. Abbreviations: SWSV, Seewis virus. nt, nucleotides; aa, amino acids.
  2. *Percent similarities for the S segment are shown for varying lengths of nucleotides and amino acids (shown in parentheses), whereas for the L segment, similarities are shown for 400 nucleotides and 133 amino acids.