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Table 4 Oligonucleotide primers for RT-qPCR amplification of RRV (17577) genes

From: The ORF59 DNA polymerase processivity factor homologs of Old World primate RV2 rhadinoviruses are highly conserved nuclear antigens expressed in differentiated epithelium in infected macaques

Gene

Orientation

Name

Sequence (5'-3')1

ORF8 (Glycoprotein B)

Forward

IQTTa

CAGGGCGATACAGACGAC

 

Reverse

ATIKb

TCTTGATGGTGGCGTTGA

ORF9 (DNA Polymerase)

Forward

HGFTa

GGATCACGGGTTGACCAC

 

Reverse

TREGb

GCCTTCCCTGGTCGTGT

ORF50 (Replication and Transcription Activator)

Forward

ATCNa

CCGCCACCTGTAACGTC

 

Reverse

SFPRb

CCTTCATTTCCGCGTAG

ORF59 (DNA Polymerase Processivity Factor)

Forward

HKSVa

GTGCACAAGAGCGTCGTG

 

Reverse

CKIPb

ATCCCGGAATCTTACATG

ORF73 (Latency-associated nuclear antigen)

Forward

RGGTa

CGCGGCGGCACTAGA

 

Reverse

MATLb

CCTGATGGCGACCCTT

Cellular Ribosomal Phosphoprotein (RPO)

Forward

RP01a

AGCAGGTGTTCGACAATGGCA

 

Reverse

RP01b

ACTCTTCCTTGGCTTCAACC

  1. 1 Primer sequences derived from RRV (17577) accession [NC_003401]