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Table 1 Analysis of human influenza virus NEG8 ORFs, post 1950, which vary from the 216 codon length

From: Evidence for a novel gene associated with human influenza A viruses

Length of NEG8 ORF (codons)

No. of viruses

Description of ORF

261

2 (.12%)

Loss of stop codon from 216 codon ORF; ORF runs to end of sequence

258

1 (.06%)

Loss of stop codon from 216 Codon ORF; ORF runs to end of sequence

246

4 (.23%)

Loss of stop codon from 216 Codon ORF.

235

1 (.06%)

Loss of stop codon before 216 ORF start codon; extends 5' end of ORF.

204

1 (.06%)

Mutation resulting in new stop codon.

197

22 (1.3%)

Mutation resulting in new stop codon; not 22 separate events.1

178

1 (.06%)

Mutation resulting in new stop codon.

167

2 (.12%)

Most closely related to viruses isolated in 1930s; contamination resulting in mis-named viruses.

147

2 (.12%)

Mutation resulting in new stop codon; 2 separate events.

142

20 (1.1%)

Loss of start codon or new stop codon close to start of NEG 8 ORF.2

140

2 (.12%)

Mutation resulting in new stop codon; 1 event.

135

12 (.69%)

Mutation resulting in new stop codon; 4 separate events.

91

1 (.06%)

Mutation resulting in new stop codon.

  1. 1At least 2 nucleotides are changed when this stop codon is produced. Only 1 amino acid changes in the NS1 protein, at a relatively variable position. Phylogeny suggests approximately 13 different viruses arose in a variety of years with this stop codon after codon 197 in NEG8 ORF. 2142 codon ORF results from downstream AUG codon. Some of these ORFs would probably not be translated beyond a short peptide if the usual NEG8 initiating AUG is used.