Characterization of untranslated regions of the salmonid alphavirus 3 (SAV3) genome and construction of a SAV3 based replicon

Table 2 Mutations in the pmSAV3 coding region compared to the previously published sequence of SAVH20/03 passage 20 (Accession number DQ149204).

Position in ORF	Protein product	Nucleotide substitution	Amino acid substitution
306	nsP1	A to G	Silent
702	nsP1	T to C	Silent
2219	nsP2	C to A	A to D
4098	nsP2	A to G	Silent
5427	nsP3	C to T	Silent
5788	nsP3	T to C	R to C
7593	nsP4	A to G	Silent
7602	nsP4	A to G	Silent

Positions refer to nucleotide position in the ORF encoding SAV3 non-structural proteins.

ISSN: 1743-422X