Skip to main content

Table 4 Percent (%) nucleotide or deduced amino acid sequence identity of the Great Lakes VHSV-MI03GL with other VHSV strains a, b, c

From: Molecular characterization of the Great Lakes viral hemorrhagic septicemia virus (VHSV) isolate from USA

VHSV Strains

3'UTRÂ¥

N

P

M

G

NV

L

5'UTRÂ¥

Complete

Genome¥

07-71

95

92

90

97

93

73

78

79

86

Fi13

95

92

93

96

93

74

96

80

87

FA281107*

95

92

94

96

94

72

96

76

87

JF00Ehi1

96

96

100

98

96

89

99

90

96

KRRV9822

94

97

94

98

95

90

96

87

95

14-58

-

93

93

96

94

74

96

-

87┼

96-43

-

93

94

98

93

75

97

-

87┼

Cod Ulcus

-

93

94

97

94

74

97

-

87┼

Hededam

-

93

94

97

94

76

97

-

87┼

Makah

-

94

98

98

96

92

-

-

-

DK-1p49

-

-

-

-

-

72

-

-

-

DK-1p53

-

-

-

-

-

72

-

-

-

DK-1p55

-

-

-

-

-

72

-

-

-

DQ159194

-

-

-

-

-

72

-

-

-

  1. a bold letters in rows and columns indicates VHSV strains and VHSV proteins showing highest identity with MI03GL strain
  2. b¥ only nucleotide sequences were used for analysis
  3. c *termini sequences were incomplete; ┼ only coding sequences were available for comparison; (-) denotes that sequences are not available
Back to article page

Virology Journal

ISSN: 1743-422X