Table 2 Information about the viral hemorrhagic septicemia virus (VHSV) isolates used in this study for comparison and phylogenetic analysis
S. No | Strain | Country | Host | GenBank no. |
|---|---|---|---|---|
N protein | ||||
1. | 07-71 | France | VHSV-infected cell line EPC | D00687 |
2. | Makah | USA | Coho salmon | X59241 |
P protein | ||||
3. | 07-71 | France | rainbow trout | U02624 |
4. | Makah | USA | Coho salmon | U02630 |
M protein | ||||
5. | Makah | USA | Coho salmon | U03503 |
6. | 07-71 | France | rainbow trout | U03502 |
G protein | ||||
7. | NO-2007-50-385 | Denmark | rainbow trout | EU547740 |
8. | Dwb97-04 | Germany | rainbow trout | EU708816 |
9. | Datt107 | Germany | rainbow trout | EU708734 |
10. | Au917-04 | Austria | rainbow trout | EU708733 |
11. | Au28-95 | Austria | rainbow trout | EU708729 |
12. | JF00Ehi1 | Japan | Japanese flounder | AB490792 |
13. | BC99-001 | Canada | Pacific sardine | DQ401195 |
14. | BC99-010 | Canada | Pacific herring | DQ401194 |
15. | ME03 | Canada | Atlantic herring | DQ401192 |
16. | JP99Obama25 | Japan | Japanese flounder | DQ401191 |
17. | JP96KRRV9601 | Japan | Japanese flounder | DQ401190 |
18. | WA91Clearwater | USA | coho salmon | DQ401189 |
19. | BC99-292 | Canada | Atlantic salmon | DQ401188 |
20. | BC93-372 | Canada | Pacific herring | DQ401186 |
21. | BC98-250 | Canada | Atlantic salmon | DQ401187 |
22. | KRRV9822 | Japan | Japanese flounder | AB179621 |
23. | UK-MLA98/6PT11 | North Sea | Norway pout | AY546632 |
24. | UK-MLA98/6HE1 | North Sea | herring | AY546631 |
25. | UK-H17/5/93 | North Sea, E. Shetland | cod | AY546630 |
26. | UK-H17/2/95 | North Sea, E. Shetland | haddock | AY546629 |
27. | UK-860/94 | Gigha, W Scotland | turbot | AY546628 |
28. | SE-SVA32 | Kattegat | Bottom-living* | AY546627 |
29. | SE-SVA31 | Kattegat | herring | AY546626 |
30. | NO-A16368G | Norway | rainbow trout | AY546621 |
31. | IR-F13.02.97 | Ireland | turbot | AY546620 |
32. | GE-1.2 | Georgia | rainbow trout | AY546619 |
33. | FR-L59X | France | Eel | AY546618 |
34. | FR-2375 | France | rainbow trout | AY546617 |
35. | FI-ka422 | Gulf of Bothnia | rainbow trout | AY546615 |
36. | DK-200079-1 | Denmark | rainbow trout | AY546613 |
37. | DK-200098 | Denmark | rainbow trout | AY546605 |
38. | DK-9895174 | Denmark | rainbow trout | AY546603 |
39. | DK-2835 | Denmark | rainbow trout | AY546585 |
40. | DK-5123 | Denmark | rainbow trout | AY546588 |
41. | DK-5e59 | Denmark | dab | AY546583 |
42. | DK-1p8 | Denmark | herring | AY546573 |
43. | CH-FI262BFH | Switzerland | rainbow trout | AY546571 |
44. | AU-8/95 | Austria | rainbow trout | AY546570 |
45. | DK-1p52 | Denmark | sprat | AY546576 |
46. | AY167587 | Korea | olive flounder | AY167587 |
47. | Cod Ulcus | UK | Atlantic cod | Z93414 |
48. | Hededam | Denmark | rainbow trout | Z93412 |
49. | 96-43 | UK | Atlantic herring | AF143862 |
50. | Fil3 | France | rainbow trout | Y18263 |
51. | 02-84 France | France | Salmo trutta | VHU28800 |
52. | Makah | USA | Coho salmon | VHU28747 |
53. | FA281107 | Norway | rainbow trout | EU481506 |
NV protein | ||||
54. | DK-1p55 | Baltic Sea | Sprat | DQ162801 |
55. | DK-1p53 | Baltic Sea | herring | DQ159195 |
56. | DK-1p52 | Baltic Sea | Sprat | DQ159194 |
57. | DK-1p49 | Baltic Sea | rockling | DQ159193 |
58. | F1 | Denmark | rainbow trout | U47848 |
59. | 07-71 | France | rainbow trout | U28746 |
60. | Makah | USA | Coho salmon | U28745 |
Complete genome | ||||
61. | JF00Ehi1 | Japan | Japanese flounder | AB490792 |
62. | FA281107 | Norway | rainbow trout | EU481506 |
63. | Fil3 | France | rainbow trout | NC_000855 |
64. | KRRV9822 | Japan | Japanese flounder | AB179621 |
65. | Cod Ulcus | UK | Atlantic cod | Z93414 |
66. | Hededam | Denmark | rainbow trout | Z93412 |
67. | 96-43 | UK | Atlantic herring | AF143862 |
68. | 14-58 | France | rainbow trout | AF143863 |
69. | 07-71 | France | rainbow trout | AJ233396 |
Rhabdoviruses Complete Genome | ||||
70. | Rhabdovirus | GenBank no. | ||
71. | Bovine ephemeral fever virus (BEFV) | NC_002526 | ||
72. | European bat lyssavirus (Bat) | NC_009527 | ||
73. | Northern cereal mosaic virus (Cereal) | NC_002251 | ||
74. | Lettuce necrotic yellows virus (Lettuce) | NC_007642 | ||
75. | Maize Fine streak virus | NC_005974 | ||
76. | Maize mosaic virus (MMV) | NC_005975 | ||
77. | Mokola virus | NC_006429 | ||
78. | Orchid fleck virus (OFV) | NC_009609 | ||
79. | Rabies virus | NC_001542 | ||
80. | Siniperca chuatsi rhabdovirus | NC_008514 | ||
81. | Spring viremia of carp virus (SVC) | NC_002803 | ||
82. | Sonchus yellow net virus (SYN) | NC_001615 | ||
83. | Taro vein chlorosis virus (Taro) | NC_006942 NC_006942 NC_006942 | ||
84. | Tupaia rhabdovirus | NC_007020 | ||
85. | Vesicular stomatitis virus (VSV) | NC_001560 | ||
86. | Infectious hematopoietic necrosis virus (IHNV) | X89213 | ||
87. | Hirame rhabdovirus (HIRRV) | NC_005093 | ||
88. | Snakehead rhabdovirus (SHRV) | NC_000903 | ||