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Table 4 The best fitting models and model-averaged results obtained by the GABranch analysis

From: Evidence of HIV-1 adaptation to host HLA alleles following chimp-to-human transmission

HLA allele

Best fitting model: ω rate classes (number of branches)1

Model-averaged ω for HIV ancestral branch2

Model-averaged Prob(dN>dS)3 for HIV ancestral branch

A*0201

1.14 (33), 0.62 (46)

1.14

0.996

A*6801

1.15 (42), 0.60 (31), 0.23(6)

1.15

0.996

B*2705

0.52 (79)

0.52

0.06

  1. 1For each rate class, the value of ω is indicated followed by the number of branches (out of a total of 79) in brackets. 2The ω values are means over results from all the models. 3Prob (dN>dS) is the fraction of models that show support for dN>dS.
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Virology Journal

ISSN: 1743-422X