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Table 2 Sequence data for the regions predicted to have potential HLA binding peptides

From: Evidence of HIV-1 adaptation to host HLA alleles following chimp-to-human transmission

HLA allele Anchor residue motif1 Predicted HLA binding regions
A*0201 .[AILTVM]...... [AILTVM] 395 codons
A*6801 [AILTVM]...... [RK]. 345 codons
B*2705 .[RK]...... [LFYRKHMI]. 148 codons
  1. 1 The anchor residue motifs were predicted from HLA-peptide structural conformations in PREDEP, residues in square brackets are the most preferred at the specific anchor site and the dots represent any other amino acid.