Comparative analysis of complete nucleotide sequence of porcine reproductive and respiratory syndrome virus (PRRSV) isolates in Thailand (US and EU genotypes)

Table 3 Pair-wise sequence comparison of full-length nucleotide sequences of PRRSV from Thailand and those of EU and US strains

Pair-wise sequence comparison of PRRS viruses (% nucleotide identity)*
	01NP1	MLV	VR2332	PA8	16244B	SP	HUN4	01CB1	LV	EuroPRRSV
01NP1	100	99.9	99.5	99.3	98.5	93.2	89.1	59.1	59.1	59.2
MLV		100	99.7	99.4	98.6	93.2	89.2	59.1	59.1	59.2
VR2332			100	99.2	98.3	93.0	89.0	59.1	59.2	59.3
PA8				100	98.2	92.9	89.0	59.0	59.1	59.2
16244B					100	92.5	88.8	59.2	59.3	59.3
SP						100	88.3	59.1	59.1	59.1
HUN4							100	59.4	59.5	59.5
01CB1								100	99.2	95.2
LV									100	95.3
EuroPRRSV										100

ISSN: 1743-422X