From: Sequence diversity on four ORFs of citrus tristeza virus correlates with pathogenicity
Primer Name | Genomic region | Nucleotide sequence (5' → 3') | Primer localization (nt)a | Size of product (pb) |
---|---|---|---|---|
IRA 9 | P349-Bc | 5'TTGGTTGGTGGTGAGTCTGC3' | 1555–1574 | 876 |
IRA 10 | 5'GTGCCACTCGGAAAACTGAAAT3' | 2414–2435 | ||
IRA 11 | P349- Cc | 5'TGAGCAGATCGGAGGTCTTG3' | 6921–6940 | 1050 |
IRA 12 | 5'ACGTCATCGTCCAAATCCA3' | 7952–7970 | ||
IRA 1 | CP | 5'ATGGACGACGAAACAAAGAAATTG3' | 16116–16139 | 672 |
IRA 2 | 5'GC TCAACGTGTGTTAA3' | 16774–16787 | ||
IRA 5 | P13 | 5'GACTTAGACACGAAGTGACC3' | 17250–17269 | 360 |
IRA 6 | 5'CTAAAGTAAGCTCGCATATTG3' | 17721–17741 | ||
IRA 7 | P23 | 5'CGTGTAGGTTAATACGCTTCTC3' | 18267–18288 | 630 |
IRA 8 | 5'CTTATTCCGTCCACTTCAATCAG3' | 18982–19004 |