Skip to main content

Table 3 Nucleotide variation observed in CTV isolatesa

From: Sequence diversity on four ORFs of citrus tristeza virus correlates with pathogenicity

 

P349-B nuc. at position:

 

25

56

81

87

117

177

186

222

258

392

440

499

518

638

642

695

M

T

G

G

G

G

A

G

G

A

T

T

G

A

C

G

A

FSC

G

C

T

T

A

G

T

A

G

C

G

A

C

T

A

T

T36

   

C

T

          

C

 

P349-B nuc. at position:

p349-C nuc. at position:

 

700

725

733

746

759

774

834

870

 

31

121

149

151

156

169

252

M

G

G

A

G

C

C

G

A

 

C

T

A

A

C

A

G

SC

A

A

G

A

T

T

A

G

 

T

G

S

B

W

K

A

T36

T

T

         

G

T

T

G

 
 

P349-C nuc. at position:

 

310

311

313

355

356

357

425

432

519

557

558

615

666

678

699

747

M

G

C

T

C

C

T

T

A

T

T

A

A

A

A

T

G

SC

T

T

M

R

R

V

S

S

R

S

G

Y

G

G

C

A

T36

  

G

G

A

C

C

C

A

G

 

C

    
 

p349-C nuc. at position:

CP nuc. at position:

 

797

809

854

962

1025

255

336

360

371

396

435

522

606

M

G

A

C

T

A

C

A

C

A

A

T

T

A

SC

A

G

K

C

G

T

G

W

T

T

C

C

G

T36

  

T

     

T

      
 

P13 nuc. at position:

 

P23 nuc. at position:

 

33

45

48

114

135

190

192

222

241

301

 

70

80

86

87

117

M

A

A

G

A

T

T

G

C

T

C

 

A

A

A

A

T

SC

G

G

A

G

A

C

A

T

G

A

 

G

C

G

T

R

T36

               

G

 

P23 nuc. at position:

  

138

145

150

228

235

237

300

375

382

459

M

T

C

G

C

C

C

G

A

T

A

SC

C

T

A

T

T

G

A

T

A

G

T36

               
  1. a Nucleotide (nuc.) differences in five CTV genomic region among mild isolates (M), severe common isolates (SC) and T36 isolate. Nucleotide positions which resulted in amino acid residue changes are underlined. Only differences between T36 and SC are indicated for T36. S: C or G; M: A or C; B: C or G or T; W: A or T; K: G or T; R: A or G; V: A or C or G; Y: C or T.