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Table 2 Primers.

From: Diversification of West Nile virus in a subtropical region

 

Forward Primer

Reverse Primer

Envelope 1st

(1042–1857)

5'-GAAGGCGATAGTTGTGTGACCA-3'

(1042–1063)

5'-TGTTCCCTTCAGCTGCAACTT-3'

(1834–1854)

Envelope 2nd

(1632–2459)

5'-CCTTGGAGCAGTGCTGGAAGTA-3'

(1636–1657)

5'-TTCACGGAGAGGAAGAGCAGAA-3'

(2438–2459)

NS3 1st

(5085–5908)

5'-CGGCTCATACATAAGCGCGAT-3'

(5085–5105)

5'-TTGGTTTCACACTCTTCCGGC-3'

(5888–5908)

NS3 2nd

(5514–6318)

5'-TTCCACAAAGGTCGAGCTAGG-3'

(5514–5534)

5'-CCTAGGACCATCAAAGCACCA-3'

(6298–6318)

NS3 3rd

(5950–6726)

5'-CCATCTGCAGTGACAGCAGCTA-3'

(5950–5971)

5'-TTCGTTCCTGGAACTTCAGCC-3'

(6756–6776)

  1. Primer sequences used to sequence the envelope and NS3 regions of the samples.
  2. *NT positions refer to amplicon location with respect to "WNV RNA, Complete Genome" GenBank accession number M12294