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Table 2 Rate and shape parameters estimated by Modeltest 3.7 for each of the four phylogenies presented in Figures. 3, 4, and 8

From: Temporal and geographic evidence for evolution of Sin Nombre virus using molecular analyses of viral RNA from Colorado, New Mexico and Montana

  Transition/transversion ratio Kappa Model Shape parameter (α)
Phylogeny           
Figure 2
M segment
- - GTR + Γ 0.1401
Figure 3
S segment
- - GTR + Γ 0.1675
Figure 8
M segment
7.7887 15.58 K80(K2P) + Γ 0.0004
Figure 8
S segment
- - GTR + Γ 0.1693
  Substitution rate matrix Proportion of each nucleotide
Phylogeny AC AG AT CG CT GT A C G T
Figure 2
M segment
1.000 9.889 0.176 0.176 9.889 1.000 0.339 0.181 0.167 0.314
Figure 3
S segment
2.349 18.668 1.041 0.258 26.663 1.000 0.302 0.196 0.224 0.278
Figure 8
M segment
- - - - - - 0.250 0.250 0.250 0.250
Figure 8
S segment
1.000 11.321 0.522 0.522 18.495 1.000 0.306 0.194 0.221 0.279