Table 2 Gene ontology analyses of down-regulated genes
Non-redundant GO categories | Level | Differentially expressed (%) | Total genes in the class (%) | P |
|---|---|---|---|---|
Over-represented | ||||
Photosynthesis | 3 | 4.76 (16) | 0.57 | 5.99×10-7 |
Response to jasmonic acid stimulus | 4 | 3.79 (12) | 0.98 | 8.94×10-3 |
Response to salicylic acid stimulus | 4 | 3.15 (10) | 0.89 | 3.70×10-2 |
Response to auxin stimulus | 5 | 8.77 (25) | 2.06 | 2.14×10-6 |
Response to salt stress | 5 | 5.61 (16) | 1.41 | 7.85×10-4 |
Response to water deprivation | 5 | 4.21 (12) | 0.87 | 1.59×10-3 |
Response to ethylene stimulus | 5 | 4.21 (12) | 1.23 | 1.97×10-2 |
Response to cadmium ion | 6 | 3.95 (9) | 0.44 | 3.67×10-4 |
Lipids biosynthetic processes | 6 | 9.21 (21) | 3.11 | 1.59×10-3 |
Chloroplast organization and biogenesis | 6 | 2.63 (6) | 0.36 | 1.84×10-2 |
Chlorophyll biosynthesis | 7 | 4.52 (8) | 0.20 | 1.03×10-5 |
Vitamin E biosynthesis | 7 | 2.26 (4) | 0.05 | 1.72×10-3 |
Abscisic acid mediated signaling | 7 | 3.95 (7) | 0.60 | 1.13×10-2 |
NADH dehydrogenase complex assembly | 8 | 1.89 (2) | 0.00 | 3.70×10-2 |
Starch biosynthetic processes | 9 | 7.14 (4) | 0.34 | 1.12×10-2 |
Tetraterpenoid metabolism | 9 | 8.93 (5) | 1.17 | 3.79×10-2 |