TY - JOUR AU - Gavin, P. J. AU - Thomson, R. B. PY - 2004 DA - 2004// TI - Review of rapid diagnostic tests for influenza JO - Clinical and Applied Immunology Reviews VL - 4 UR - https://doi.org/10.1016/S1529-1049(03)00064-3 DO - 10.1016/S1529-1049(03)00064-3 ID - Gavin2004 ER - TY - JOUR AU - Olsen, B. AU - Munster, V. J. AU - Wallensten, A. AU - Waldenstrom, J. AU - Osterhaus, A. D. AU - Fouchier, R. A. PY - 2006 DA - 2006// TI - Global patterns of influenza a virus in wild birds JO - Science VL - 312 UR - https://doi.org/10.1126/science.1122438 DO - 10.1126/science.1122438 ID - Olsen2006 ER - TY - JOUR AU - Zhang, W. D. AU - Evans, D. H. PY - 1991 DA - 1991// TI - Detection and identification of human influenza viruses by the polymerase chain reaction JO - J Virol Methods VL - 33 UR - https://doi.org/10.1016/0166-0934(91)90017-T DO - 10.1016/0166-0934(91)90017-T ID - Zhang1991 ER - TY - JOUR AU - Horimoto, T. AU - Kawaoka, Y. PY - 2001 DA - 2001// TI - Pandemic threat posed by avian influenza A viruses JO - Clin Microbiol Rev VL - 14 UR - https://doi.org/10.1128/CMR.14.1.129-149.2001 DO - 10.1128/CMR.14.1.129-149.2001 ID - Horimoto2001 ER - TY - JOUR AU - Payungporn, S. AU - Chutinimitkul, S. AU - Chaisingh, A. AU - Damrongwantanapokin, S. AU - Buranathai, C. AU - Amonsin, A. AU - Theamboonlers, A. AU - Poovorawan, Y. PY - 2006 DA - 2006// TI - Single step multiplex real-time RT-PCR for H5N1 influenza A virus detection JO - J Virol Methods VL - 131 UR - https://doi.org/10.1016/j.jviromet.2005.08.004 DO - 10.1016/j.jviromet.2005.08.004 ID - Payungporn2006 ER - TY - JOUR AU - Fouchier, R. A. AU - Munster, V. AU - Wallensten, A. AU - Bestebroer, T. M. AU - Herfst, S. AU - Smith, D. AU - Rimmelzwaan, G. F. AU - Olsen, B. AU - Osterhaus, A. D. PY - 2005 DA - 2005// TI - Characterization of a novel influenza A virus hemagglutinin subtype (H16) obtained from black-headed gulls JO - J Virol VL - 79 UR - https://doi.org/10.1128/JVI.79.5.2814-2822.2005 DO - 10.1128/JVI.79.5.2814-2822.2005 ID - Fouchier2005 ER - TY - JOUR AU - Gamblin, S. J. AU - Haire, L. F. AU - Russell, R. J. AU - Stevens, D. J. AU - Xiao, B. AU - Ha, Y. AU - Vasisht, N. AU - Steinhauer, D. A. AU - Daniels, R. S. AU - Elliot, A. PY - 2004 DA - 2004// TI - The structure and receptor binding properties of the 1918 influenza hemagglutinin JO - Science VL - 303 UR - https://doi.org/10.1126/science.1093155 DO - 10.1126/science.1093155 ID - Gamblin2004 ER - TY - JOUR AU - Li, O. T. AU - Barr, I. AU - Leung, C. Y. AU - Chen, H. AU - Guan, Y. AU - Peiris, J. S. AU - Poon, L. L. PY - 2007 DA - 2007// TI - Reliable universal RT-PCR assays for studying influenza polymerase subunit gene sequences from all 16 haemagglutinin subtypes JO - J Virol Methods VL - 142 UR - https://doi.org/10.1016/j.jviromet.2007.01.015 DO - 10.1016/j.jviromet.2007.01.015 ID - Li2007 ER - TY - JOUR AU - Russell, R. J. AU - Haire, L. F. AU - Stevens, D. J. AU - Collins, P. J. AU - Lin, Y. P. AU - Blackburn, G. M. AU - Hay, A. J. AU - Gamblin, S. J. AU - Skehel, J. J. PY - 2006 DA - 2006// TI - The structure of H5N1 avian influenza neuraminidase suggests new opportunities for drug design JO - Nature VL - 443 UR - https://doi.org/10.1038/nature05114 DO - 10.1038/nature05114 ID - Russell2006 ER - TY - JOUR AU - Trampuz, A. AU - Prabhu, R. M. AU - Smith, T. F. AU - Baddour, L. M. PY - 2004 DA - 2004// TI - Avian influenza: a new pandemic threat? JO - Mayo Clin Proc VL - 79 UR - https://doi.org/10.4065/79.4.523 DO - 10.4065/79.4.523 ID - Trampuz2004 ER - TY - STD TI - World Health Organization: Avian Influenza. [http://www.who.int/en/] UR - http://www.who.int/en/ ID - ref11 ER - TY - JOUR AU - Lee, M. S. AU - Chang, P. C. AU - Shien, J. H. AU - Cheng, M. C. AU - Shieh, H. K. PY - 2001 DA - 2001// TI - Identification and subtyping of avian influenza viruses by reverse transcription-PCR JO - J Virol Methods VL - 97 UR - https://doi.org/10.1016/S0166-0934(01)00301-9 DO - 10.1016/S0166-0934(01)00301-9 ID - Lee2001 ER - TY - STD TI - World Health Organization: Avian Influenza, H5N1 avian influenza: Timeline of major events 11 sep 2007. [http://www.who.int/csr/disease/avian_influenza/ai_timeline/en/index.html] UR - http://www.who.int/csr/disease/avian_influenza/ai_timeline/en/index.html ID - ref13 ER - TY - JOUR AU - Quinlivan, M. AU - Dempsey, E. AU - Ryan, F. AU - Arkins, S. AU - Cullinane, A. PY - 2005 DA - 2005// TI - Real-time reverse transcription PCR for detection and quantitative analysis of equine influenza virus JO - J Clin Microbiol VL - 43 UR - https://doi.org/10.1128/JCM.43.10.5055-5057.2005 DO - 10.1128/JCM.43.10.5055-5057.2005 ID - Quinlivan2005 ER - TY - JOUR AU - Allan, W. H. AU - Gough, R. E. PY - 1974 DA - 1974// TI - A standard haemagglutination inhibition test for Newcastle disease. (1). A comparison of macro and micro methods JO - Vet Rec VL - 95 UR - https://doi.org/10.1136/vr.95.6.120 DO - 10.1136/vr.95.6.120 ID - Allan1974 ER - TY - CHAP AU - Palmer, D. F. AU - Dowdle, W. R. AU - Coleman, M. T. AU - Schild, G. C. PY - 1975 DA - 1975// TI - Advanced laboratory techniques for influenza diagnosis BT - Immunology Series No 6 (US Department of Health Education and Welfare/US Public Health Service, Washington DC) ID - Palmer1975 ER - TY - JOUR AU - Aymard-Henry, M. AU - Coleman, M. T. AU - Dowdle, W. R. AU - Laver, W. G. AU - Schild, G. C. AU - Webster, R. G. PY - 1973 DA - 1973// TI - Influenzavirus neuraminidase and neuraminidase-inhibition test procedures JO - Bull World Health Organization VL - 48 ID - Aymard-Henry1973 ER - TY - JOUR AU - Van Deusen, R. A. AU - Hinshaw, V. S. AU - Senne, D. A. AU - Pellacani, D. PY - 1983 DA - 1983// TI - Micro neuraminidase-inhibition assay for classification of influenza A virus neuraminidases JO - Avian Dis VL - 27 UR - https://doi.org/10.2307/1590317 DO - 10.2307/1590317 ID - Van Deusen1983 ER - TY - JOUR AU - Carraro, E. AU - Neto, D. F. AU - Benfica, D. AU - SittaPerosa, A. H. AU - Granato, C. F. AU - Bellei, N. C. PY - 2007 DA - 2007// TI - Applications of a duplex reverse transcription polymerase chain reaction and direct immunofluorescence assay in comparison with virus isolation for detection of influenza A and B JO - Diagn Microbiol Infect Dis VL - 57 UR - https://doi.org/10.1016/j.diagmicrobio.2006.11.004 DO - 10.1016/j.diagmicrobio.2006.11.004 ID - Carraro2007 ER - TY - JOUR AU - Dawson, E. D. AU - Moore, C. L. AU - Smagala, J. A. AU - Dankbar, D. M. AU - Mehlmann, M. AU - Townsend, M. B. AU - Smith, C. B. AU - Cox, N. J. AU - Kuchta, R. D. AU - Rowlen, K. L. PY - 2006 DA - 2006// TI - MChip: a tool for influenza surveillance JO - Anal Chem VL - 78 UR - https://doi.org/10.1021/ac061739f DO - 10.1021/ac061739f ID - Dawson2006 ER - TY - JOUR AU - Poddar, S. K. PY - 2002 DA - 2002// TI - Influenza virus types and subtypes detection by single step single tube multiplex reverse transcription-polymerase chain reaction (RT-PCR) and agarose gel electrophoresis JO - J Virol Methods VL - 99 UR - https://doi.org/10.1016/S0166-0934(01)00380-9 DO - 10.1016/S0166-0934(01)00380-9 ID - Poddar2002 ER - TY - JOUR AU - Stockton, J. AU - Ellis, J. S. AU - Saville, M. AU - Clewley, J. P. AU - Zambon, M. C. PY - 1998 DA - 1998// TI - Multiplex PCR for typing and subtyping influenza and respiratory syncytial viruses JO - J Clin Microbiol VL - 36 ID - Stockton1998 ER - TY - JOUR AU - Takao, S. AU - Shimazu, Y. AU - Fukuda, S. AU - Kuwayama, M. AU - Miyazaki, K. PY - 2002 DA - 2002// TI - Neuraminidase subtyping of human influenza a viruses by RT-PCR and its application to clinical isolates JO - Jpn J Infect Dis VL - 55 ID - Takao2002 ER - TY - JOUR AU - Hoffmann, E. AU - Stech, J. AU - Guan, Y. AU - Webster, R. G. AU - Perez, D. R. PY - 2001 DA - 2001// TI - Universal primer set for the full-length amplification of all influenza A viruses JO - Arch Virol VL - 146 UR - https://doi.org/10.1007/s007050170002 DO - 10.1007/s007050170002 ID - Hoffmann2001 ER - TY - STD TI - World health organization: Influenza A (H1N1) virus resistance to oseltamivir – last quarter 2007 to 4 April 2008. [http://www.who.int/csr/disease/influenza/h1n1_table/en/index.html] UR - http://www.who.int/csr/disease/influenza/h1n1_table/en/index.html ID - ref25 ER - TY - JOUR AU - Fouchier, R. A. M. AU - Bestebroer, T. M. AU - Herfst, S. AU - Kemp, L. v. a. n. d. e. r. AU - Rimmelzwaan, G. F. AU - Osterhaus, A. PY - 2000 DA - 2000// TI - Detection of influenza A viruses from different species by PCR amplification of conserved sequences in the matrix gene JO - J Clin Microbiol VL - 38 ID - Fouchier2000 ER - TY - JOUR AU - Syrmis, M. W. AU - Whiley, D. M. AU - Thomas, M. AU - Mackay, I. M. AU - Williamson, J. AU - Siebert, D. J. AU - Nissen, M. D. AU - Sloots, T. P. PY - 2004 DA - 2004// TI - A sensitive, specific, and cost-effective multiplex reverse transcriptase-PCR assay for the detection of seven common respiratory viruses in respiratory samples JO - J Mol Diagn VL - 6 UR - https://doi.org/10.1016/S1525-1578(10)60500-4 DO - 10.1016/S1525-1578(10)60500-4 ID - Syrmis2004 ER - TY - JOUR AU - van Elden, L. J. R. AU - Nijhuis, M. AU - Schipper, P. AU - Schuurman, R. AU - van Loon, A. M. PY - 2001 DA - 2001// TI - Simultaneous detection of influenza viruses A and B using real-time quantitative PCR JO - J Clin Microbiol VL - 39 UR - https://doi.org/10.1128/JCM.39.1.196-200.2001 DO - 10.1128/JCM.39.1.196-200.2001 ID - van Elden2001 ER - TY - CHAP AU - Chaharaein, B. AU - Omar, A. R. AU - Aini, I. AU - Yusoff, K. AU - Hassan, S. S. PY - 2007 DA - 2007// TI - Detection of H5, H7 and H9 subtypes of avian influenza viruses by multiplex reverse transcription-polymerase chain reaction BT - Microbiol Res ID - Chaharaein2007 ER - TY - STD TI - National center for biotechnology information: Influenza virus resource database (IVRD). [http://www.ncbi.nlm.nih.gov/genomes/FLU/] UR - http://www.ncbi.nlm.nih.gov/genomes/FLU/ ID - ref30 ER - TY - STD TI - Biological sequence alignment editor for Win95/98/n2/2K/XP (BioEdit). [http://www.mbio.ncsu.edu/BioEdit/bioedit.html] UR - http://www.mbio.ncsu.edu/BioEdit/bioedit.html ID - ref31 ER - TY - JOUR AU - Crooks, G. E. AU - Hon, G. AU - Chandonia, J. M. AU - Brenner, S. E. PY - 2004 DA - 2004// TI - WebLogo: a sequence logo generator JO - Genome Res VL - 14 UR - https://doi.org/10.1101/gr.849004 DO - 10.1101/gr.849004 ID - Crooks2004 ER - TY - JOUR AU - Schneider, T. D. AU - Stephens, R. M. PY - 1990 DA - 1990// TI - Sequence logos: a new way to display consensus sequences JO - Nucleic Acids Res VL - 18 UR - https://doi.org/10.1093/nar/18.20.6097 DO - 10.1093/nar/18.20.6097 ID - Schneider1990 ER - TY - CHAP AU - Shaner, M. C. AU - Blair, I. M. AU - Schneider, T. D. ED - Mudge, T. N. ED - Milutinovic, V. ED - Hunter, L. PY - 1993 DA - 1993// TI - Sequence logos: a powerful, yet simple tool BT - Proceedings of the Twenty-Sixth Annual Hawaii International Conference on System Sciences. Architecture and Biotechnology Computing PB - IEEE Computer Society Press CY - Los Alamitos, CA ID - Shaner1993 ER - TY - STD TI - Australian Genome Research Facility. [http://www.agrf.org.au/] UR - http://www.agrf.org.au/ ID - ref35 ER - TY - JOUR AU - Altschul, S. F. AU - Madden, T. L. AU - Schaffer, A. A. AU - Zhang, J. AU - Zhang, Z. AU - Miller, W. AU - Lipman, D. J. PY - 1997 DA - 1997// TI - Gapped BLAST and PSI-BLAST: a new generation of protein database search programs JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.17.3389 DO - 10.1093/nar/25.17.3389 ID - Altschul1997 ER - TY - JOUR AU - Olmos, A. AU - Bertolini, E. AU - Gil, M. AU - Cambra, M. PY - 2005 DA - 2005// TI - Real-time assay for quantitative detection of non-persistently transmitted Plum pox virus RNA targets in single aphids JO - J Virol Methods VL - 128 UR - https://doi.org/10.1016/j.jviromet.2005.05.011 DO - 10.1016/j.jviromet.2005.05.011 ID - Olmos2005 ER - TY - CHAP AU - Barr, D. A. AU - O'Rourke, M. D. PY - 2005 DA - 2005// TI - Virulent avian influenza BT - Australian Standard Diagnostic Techniques for Animal Disease ID - Barr2005 ER -