Figure 4
From: Recombination in feline immunodeficiency virus from feral and companion domestic cats
RIP outputs. Reference sequences used are highlighted in the respective NJ trees in Figs. 1, 2, 3. (A) Two new outlier env sequences. (a) PN18; (b) PN27. Red is similarity to subtype A, green is similarity to subtype C. (B) gag outlier sequence, PN6. Red is similarity to subtype A, green is similarity to U-NZgag. (C) pol outlier sequences. (a) Ni: red is similarity to subtype A, green is similarity to U-NZpol1, blue is similarity to U-NZpol2. (b) PN9: red is similarity to subtype B, green is similarity to U-NZpol1.