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Table 3 Description of amino acid differences among the selected DENV-3 from Taiwan and other countries as compared to reference strain H87

From: Comparative analysis of full genomic sequences among different genotypes of dengue virus type 3

Geno

V

V

I

I

I

I

II

II

II

II

II

III

III

III

III

Strain*

H87

80-2

Ind88

Ind04

TW95

Ind98

Tha94

Sing95

Tw182

Tw358

Tw368

TW99

Martini

SriLan

Brazil

Year

56'

80'

88'

04'

94'

98'

94'

95'

98'

98'

98'

99'

99'

00'

02'

Capsid

35**

R

        

K

K

K

K

K

K

65

V

 

I

I

 

I

         

82

K

 

R

R

R

R

         

97

K

 

R

R

R

R

       

Q

 

108

M

      

I

   

I

I

I

I

112

T

          

A

A

A

A

prM

55

H

 

L

L

L

L

L

L

L

L

L

    

57

T

     

A

A

A

A

A

    

128

L

 

F

F

F

F

         

Envelope

68

I

 

V

V

V

V

V

        

81

I

          

V

V

V

V

124

S

  

L

 

L

P

P

P

P

P

P

P

P

P

132

H

        

Y

Y

Y

Y

Y

Y

154

E

     

D

D

D

D

D

    

160

A

     

V

V

V

V

V

    

169

A

  

V

V

V

 

V

V

V

V

H

T

T

T

231

R

  

K

K

K

         

270

T

     

N

N

N

N

N

N

N

N

N

301

L

  

S

 

S

     

T

T

T

T

303

T

 

A

A

A

A

         

383

K

          

N

N

N

 

452

I

          

V

V

V

V

479

A

  

V

V

V

V

  

V

V

    

NS1

178

L

     

S

S

S

S

S

    

188

V

     

I

I

I

I

I

    

217

L

     

F

F

F

F

F

    

339

N

          

S

S

S

S

NS2A

37

L

          

F

F

F

F

55

H

 

R

R

 

R

         

133

A

     

T

T

T

T

T

    

153

T

 

M

M

M

          

175

I

     

V

V

V

V

V

V

V

V

V

NS3

115

I

          

T

T

T

T

255

R

 

K

K

K

K

         

324

D

     

E

E

E

E

E

    

350

E

 

D

D

 

D

         

356

V

 

A

A

 

A

     

A

A

A

A

452

V

     

A

A

A

A

A

A

A

A

A

589

K

     

R

R

R

R

R

R

   

NS4A

89

I

 

V

V

V

V

         

99

D

          

E

E

E

E

148

V

          

I

I

I

I

115

V

          

I

I

I

I

190

L

 

F

F

F

F

         

NS4B

116

V

          

I

I

I

I

191

L

 

F

F

F

F

         

NS5

281

K

  

R

R

R

         

288

S

          

N

N

N

N

336

M

 

T

T

T

T

         

422

R

  

K

       

K

K

K

K

585

K

          

T

T

T

T

619

I

     

V

V

V

V

V

V

 

V

 

749

R

 

K

K

K

K

K

K

K

K

K

    

835

D

          

N

N

N

N

876

N

     

D

D

D

D

D

    
  1. *The GeneBank accession numbers for the strains of DENV-3 compared are H87: M93130; 80-2: AF317645; Ind88: AY858038; Ind04: AY858040; TW95: DQ675519; Ind98: AY858039; Tha94: AY923865. Sing95: AY766104; TW182: DQ675520; TW358: DQ675522; TW368: DQ675525; TW99: DQ675533; Martini: AY099337; SriLan: AY099336; Brazil: AY679147.
  2. **A blank cell indicates an amino acid identical to that of strain H87.