TY - JOUR AU - Grard, G. AU - Moureau, G. AU - Charrel, R. N. AU - Lemasson, J. J. AU - Gonzalez, J. P. AU - Gallian, P. AU - Gritsun, T. S. AU - Holmes, E. C. AU - Gould, E. A. AU - de, L. PY - 2007 DA - 2007// TI - Genetic characterization of tick-borne flaviviruses: new insights into evolution, pathogenetic determinants and taxonomy JO - Virology VL - 361 UR - https://doi.org/10.1016/j.virol.2006.09.015 DO - 10.1016/j.virol.2006.09.015 ID - Grard2007 ER - TY - JOUR AU - Cammisa-Parks, H. AU - Cisar, L. A. AU - Kane, A. AU - Stollar, V. PY - 1992 DA - 1992// TI - The complete nucleotide sequence of cell fusing agent (CFA): homology between the nonstructural proteins encoded by CFA and the nonstructural proteins encoded by arthropod-borne flaviviruses JO - Virology VL - 189 UR - https://doi.org/10.1016/0042-6822(92)90575-A DO - 10.1016/0042-6822(92)90575-A ID - Cammisa-Parks1992 ER - TY - JOUR AU - Crochu, S. AU - Cook, S. AU - Attoui, H. AU - Charrel, R. N. AU - De Chesse, R. AU - Belhouchet, M. AU - Lemasson, J. J. AU - de Micco, P. AU - de, L. PY - 2004 DA - 2004// TI - Sequences of flavivirus-related RNA viruses persist in DNA form integrated in the genome of Aedes spp. mosquitoes JO - J Gen Virol VL - 85 UR - https://doi.org/10.1099/vir.0.79850-0 DO - 10.1099/vir.0.79850-0 ID - Crochu2004 ER - TY - JOUR AU - Crabtree, M. B. AU - Sang, R. C. AU - Stollar, V. AU - Dunster, L. M. AU - Miller, B. R. PY - 2003 DA - 2003// TI - Genetic and phenotypic characterization of the newly described insect flavivirus, Kamiti River virus JO - Arch Virol VL - 148 UR - https://doi.org/10.1007/s00705-003-0019-7 DO - 10.1007/s00705-003-0019-7 ID - Crabtree2003 ER - TY - JOUR AU - Hoshino, K. AU - Isawa, H. AU - Tsuda, Y. AU - Yano, K. AU - Sasaki, T. AU - Yuda, M. AU - Takasaki, T. AU - Kobayashi, M. AU - Sawabe, K. PY - 2007 DA - 2007// TI - Genetic characterization of a new insect flavivirus isolated from Culex pipiens mosquito in Japan JO - Virology VL - 359 UR - https://doi.org/10.1016/j.virol.2006.09.039 DO - 10.1016/j.virol.2006.09.039 ID - Hoshino2007 ER - TY - JOUR AU - Seligman, S. J. AU - Rapp, F. PY - 1959 DA - 1959// TI - A variant of measles virus in which giant cell formation appears to be genetically determined JO - Virology VL - 9 UR - https://doi.org/10.1016/0042-6822(59)90109-6 DO - 10.1016/0042-6822(59)90109-6 ID - Seligman1959 ER - TY - JOUR AU - Kuhn, R. J. AU - Zhang, W. AU - Rossmann, M. G. AU - Pletnev, S. V. AU - Corver, J. AU - Lenches, E. AU - Jones, C. T. AU - Mukhopadhyay, S. AU - Chipman, P. R. AU - Strauss, E. G. AU - Baker, T. S. AU - Strauss, J. H. PY - 2002 DA - 2002// TI - Structure of dengue virus: implications for flavivirus organization, maturation, and fusion JO - Cell VL - 108 UR - https://doi.org/10.1016/S0092-8674(02)00660-8 DO - 10.1016/S0092-8674(02)00660-8 ID - Kuhn2002 ER - TY - JOUR AU - Rey, F. A. AU - Heinz, F. X. AU - Mandl, C. AU - Kunz, C. AU - Harrison, S. C. PY - 1995 DA - 1995// TI - The envelope glycoprotein from tick-borne encephalitis virus at 2 A resolution JO - Nature VL - 375 UR - https://doi.org/10.1038/375291a0 DO - 10.1038/375291a0 ID - Rey1995 ER - TY - JOUR AU - Roehrig, J. T. AU - Hunt, A. R. AU - Johnson, A. J. AU - Hawkes, R. A. PY - 1989 DA - 1989// TI - Synthetic peptides derived from the deduced amino acid sequence of the E-glycoprotein of Murray Valley encephalitis virus elicit antiviral antibody JO - Virology VL - 171 UR - https://doi.org/10.1016/0042-6822(89)90509-6 DO - 10.1016/0042-6822(89)90509-6 ID - Roehrig1989 ER - TY - JOUR AU - Roehrig, J. T. AU - Johnson, A. J. AU - Hunt, A. R. AU - Bolin, R. A. AU - Chu, M. C. PY - 1990 DA - 1990// TI - Antibodies to dengue 2 virus E-glycoprotein synthetic peptides identify antigenic conformation JO - Virology VL - 177 UR - https://doi.org/10.1016/0042-6822(90)90532-V DO - 10.1016/0042-6822(90)90532-V ID - Roehrig1990 ER - TY - JOUR AU - Ledizet, M. AU - Kar, K. AU - Foellmer, H. G. AU - Bonafe, N. AU - Anthony, K. G. AU - Gould, L. H. AU - Bushmich, S. L. AU - Fikrig, E. AU - Koski, R. A. PY - 2007 DA - 2007// TI - Antibodies Targeting Linear Determinants of the Envelope Protein Protect Mice against West Nile Virus JO - The Journal of Infectious Diseases VL - 196 UR - https://doi.org/10.1086/523654 DO - 10.1086/523654 ID - Ledizet2007 ER - TY - JOUR AU - Pletnev, A. G. AU - Bray, M. AU - Lai, C. J. PY - 1993 DA - 1993// TI - Chimeric tick-borne encephalitis and dengue type 4 viruses: effects of mutations on neurovirulence in mice JO - J Virol VL - 67 ID - Pletnev1993 ER - TY - JOUR AU - Trainor, N. B. AU - Crill, W. D. AU - Roberson, J. A. AU - Chang, G. J. PY - 2007 DA - 2007// TI - Mutation analysis of the fusion domain region of St. Louis encephalitis virus envelope protein JO - Virology VL - 360 UR - https://doi.org/10.1016/j.virol.2006.10.033 DO - 10.1016/j.virol.2006.10.033 ID - Trainor2007 ER - TY - JOUR AU - Allison, S. L. AU - Schalich, J. AU - Stiasny, K. AU - Mandl, C. W. AU - Heinz, F. X. PY - 2001 DA - 2001// TI - Mutational evidence for an internal fusion peptide in flavivirus envelope protein E JO - J Virol VL - 75 UR - https://doi.org/10.1128/JVI.75.9.4268-4275.2001 DO - 10.1128/JVI.75.9.4268-4275.2001 ID - Allison2001 ER - TY - JOUR AU - Lescar, J. AU - Roussel, A. AU - Wien, M. W. AU - Navaza, J. AU - Fuller, S. D. AU - Wengler, G. AU - Wengler, G. AU - Rey, F. A. PY - 2001 DA - 2001// TI - The Fusion glycoprotein shell of Semliki Forest virus: an icosahedral assembly primed for fusogenic activation at endosomal pH JO - Cell VL - 105 UR - https://doi.org/10.1016/S0092-8674(01)00303-8 DO - 10.1016/S0092-8674(01)00303-8 ID - Lescar2001 ER - TY - JOUR AU - Billoir, F. AU - de Chesse, R. AU - Tolou, H. AU - De Micco, P. AU - Gould, E. A. AU - de Lamballerie, X. PY - 2000 DA - 2000// TI - Phylogeny of the genus flavivirus using complete coding sequences of arthropod-borne viruses and viruses with no known vector JO - J Gen Virol VL - 81 UR - https://doi.org/10.1099/0022-1317-81-3-781 DO - 10.1099/0022-1317-81-3-781 ID - Billoir2000 ER - TY - JOUR AU - Charlier, N. AU - Leyssen, P. AU - Pleij, C. W. AU - Lemey, P. AU - Billoir, F. AU - Van Laethem, K. AU - Vandamme, A. M. AU - De Clercq, E. AU - de, L. AU - Neyts, J. PY - 2002 DA - 2002// TI - Complete genome sequence of Montana Myotis leukoencephalitis virus, phylogenetic analysis and comparative study of the 3' untranslated region of flaviviruses with no known vector JO - J Gen Virol VL - 83 UR - https://doi.org/10.1099/0022-1317-83-8-1875 DO - 10.1099/0022-1317-83-8-1875 ID - Charlier2002 ER - TY - JOUR AU - Leyssen, P. AU - Charlier, N. AU - Lemey, P. AU - Billoir, F. AU - Vandamme, A. M. AU - De Clercq, E. AU - de, L. AU - Neyts, J. PY - 2002 DA - 2002// TI - Complete genome sequence, taxonomic assignment, and comparative analysis of the untranslated regions of the Modoc virus, a flavivirus with no known vector JO - Virology VL - 293 UR - https://doi.org/10.1006/viro.2001.1241 DO - 10.1006/viro.2001.1241 ID - Leyssen2002 ER - TY - JOUR AU - de Lamballerie, X. AU - Crochu, S. AU - Billoir, F. AU - Neyts, J. AU - De Micco, P. AU - Holmes, E. C. AU - Gould, E. A. PY - 2002 DA - 2002// TI - Genome sequence analysis of Tamana bat virus and its relationship with the genus Flavivirus JO - J Gen Virol VL - 83 UR - https://doi.org/10.1099/0022-1317-83-10-2443 DO - 10.1099/0022-1317-83-10-2443 ID - de Lamballerie2002 ER - TY - JOUR AU - Bryant, J. AU - Wang, H. AU - Cabezas, C. AU - Ramirez, G. AU - Watts, D. AU - Russell, K. AU - Barrett, A. PY - 2003 DA - 2003// TI - Enzootic transmission of yellow fever virus in Peru JO - Emerg Infect Dis VL - 9 UR - https://doi.org/10.3201/eid0908.030075 DO - 10.3201/eid0908.030075 ID - Bryant2003 ER - TY - JOUR AU - Bryant, J. E. AU - Barrett, A. D. PY - 2003 DA - 2003// TI - Comparative phylogenies of yellow fever isolates from Peru and Brazil JO - FEMS Immunol Med Microbiol VL - 39 UR - https://doi.org/10.1016/S0928-8244(03)00238-4 DO - 10.1016/S0928-8244(03)00238-4 ID - Bryant2003 ER - TY - JOUR AU - Mutebi, J. P. AU - Wang, H. AU - Li, L. AU - Bryant, J. E. AU - Barrett, A. D. PY - 2001 DA - 2001// TI - Phylogenetic and evolutionary relationships among yellow fever virus isolates in Africa JO - J Virol VL - 75 UR - https://doi.org/10.1128/JVI.75.15.6999-7008.2001 DO - 10.1128/JVI.75.15.6999-7008.2001 ID - Mutebi2001 ER - TY - JOUR AU - Mutebi, J. P. AU - Rijnbrand, R. C. AU - Wang, H. AU - Ryman, K. D. AU - Wang, E. AU - Fulop, L. D. AU - Titball, R. AU - Barrett, A. D. PY - 2004 DA - 2004// TI - Genetic relationships and evolution of genotypes of yellow fever virus and other members of the yellow fever virus group within the Flavivirus genus based on the 3' noncoding region JO - J Virol VL - 78 UR - https://doi.org/10.1128/JVI.78.18.9652-9665.2004 DO - 10.1128/JVI.78.18.9652-9665.2004 ID - Mutebi2004 ER - TY - JOUR AU - Vasconcelos, P. F. AU - Bryant, J. E. AU - da Rosa, T. P. AU - Tesh, R. B. AU - Rodrigues, S. G. AU - Barrett, A. D. PY - 2004 DA - 2004// TI - Genetic divergence and dispersal of yellow fever virus, Brazil JO - Emerg Infect Dis VL - 10 UR - https://doi.org/10.3201/eid1009.040197 DO - 10.3201/eid1009.040197 ID - Vasconcelos2004 ER - TY - JOUR AU - Ciota, A. T. AU - Lovelace, A. O. AU - Jones, S. A. AU - Payne, A. AU - Kramer, L. D. PY - 2007 DA - 2007// TI - Adaptation of two flaviviruses results in differences in genetic heterogeneity and virus adaptability JO - J Gen Virol VL - 88 UR - https://doi.org/10.1099/vir.0.83061-0 DO - 10.1099/vir.0.83061-0 ID - Ciota2007 ER - TY - JOUR AU - Ciota, A. T. AU - Lovelace, A. O. AU - Ngo, K. A. AU - Le, A. N. AU - Maffei, J. G. AU - Franke, M. A. AU - Payne, A. F. AU - Jones, S. A. AU - Kauffman, E. B. AU - Kramer, L. D. PY - 2007 DA - 2007// TI - Cell-specific adaptation of two flaviviruses following serial passage in mosquito cell culture JO - Virology VL - 357 UR - https://doi.org/10.1016/j.virol.2006.08.005 DO - 10.1016/j.virol.2006.08.005 ID - Ciota2007 ER - TY - JOUR AU - Twiddy, S. S. AU - Holmes, E. C. PY - 2003 DA - 2003// TI - The extent of homologous recombination in members of the genus Flavivirus JO - J Gen Virol VL - 84 UR - https://doi.org/10.1099/vir.0.18660-0 DO - 10.1099/vir.0.18660-0 ID - Twiddy2003 ER - TY - JOUR AU - Aaskov, J. AU - Buzacott, K. AU - Thu, H. M. AU - Lowry, K. AU - Holmes, E. C. PY - 2006 DA - 2006// TI - Long-term transmission of defective RNA viruses in humans and Aedes mosquitoes JO - Science VL - 311 UR - https://doi.org/10.1126/science.1115030 DO - 10.1126/science.1115030 ID - Aaskov2006 ER - TY - JOUR AU - Seligman, S. J. AU - Bucher, D. J. PY - 2003 DA - 2003// TI - The importance of being outer: consequences of the distinction between the outer and inner surfaces of flavivirus glycoprotein E JO - Trends Microbiol VL - 11 UR - https://doi.org/10.1016/S0966-842X(03)00005-2 DO - 10.1016/S0966-842X(03)00005-2 ID - Seligman2003 ER - TY - JOUR AU - Chen, W. J. AU - Wu, H. R. AU - Chiou, S. S. PY - 2003 DA - 2003// TI - E/NS1 modifications of dengue 2 virus after serial passages in mammalian and/or mosquito cells JO - Intervirology VL - 46 UR - https://doi.org/10.1159/000073208 DO - 10.1159/000073208 ID - Chen2003 ER - TY - JOUR AU - Chao, D. Y. AU - King, C. C. AU - Wang, W. K. AU - Chen, W. J. AU - Wu, H. L. AU - Chang, G. J. PY - 2005 DA - 2005// TI - Strategically examining the full-genome of dengue virus type 3 in clinical isolates reveals its mutation spectra JO - Virol J VL - 2 UR - https://doi.org/10.1186/1743-422X-2-72 DO - 10.1186/1743-422X-2-72 ID - Chao2005 ER - TY - JOUR AU - Lin, S. R. AU - Hsieh, S. C. AU - Yueh, Y. Y. AU - Lin, T. H. AU - Chao, D. Y. AU - Chen, W. J. AU - King, C. C. AU - Wang, W. K. PY - 2004 DA - 2004// TI - Study of sequence variation of dengue type 3 virus in naturally infected mosquitoes and human hosts: implications for transmission and evolution JO - J Virol VL - 78 UR - https://doi.org/10.1128/JVI.78.22.12717-12721.2004 DO - 10.1128/JVI.78.22.12717-12721.2004 ID - Lin2004 ER - TY - JOUR AU - Wang, W. K. AU - Lin, S. R. AU - Lee, C. M. AU - King, C. C. AU - Chang, S. C. PY - 2002 DA - 2002// TI - Dengue type 3 virus in plasma is a population of closely related genomes: quasispecies JO - J Virol VL - 76 UR - https://doi.org/10.1128/JVI.76.9.4662-4665.2002 DO - 10.1128/JVI.76.9.4662-4665.2002 ID - Wang2002 ER - TY - JOUR AU - Jerzak, G. AU - Bernard, K. A. AU - Kramer, L. D. AU - Ebel, G. D. PY - 2005 DA - 2005// TI - Genetic variation in West Nile virus from naturally infected mosquitoes and birds suggests quasispecies structure and strong purifying selection JO - J Gen Virol VL - 86 UR - https://doi.org/10.1099/vir.0.81015-0 DO - 10.1099/vir.0.81015-0 ID - Jerzak2005 ER - TY - JOUR AU - Pugachev, K. V. AU - Ocran, S. W. AU - Guirakhoo, F. AU - Furby, D. AU - Monath, T. P. PY - 2002 DA - 2002// TI - Heterogeneous nature of the genome of the ARILVAX yellow fever 17D vaccine revealed by consensus sequencing JO - Vaccine VL - 20 UR - https://doi.org/10.1016/S0264-410X(01)00439-X DO - 10.1016/S0264-410X(01)00439-X ID - Pugachev2002 ER - TY - JOUR AU - Biebricher, C. K. AU - Eigen, M. PY - 2006 DA - 2006// TI - What is a quasispecies? JO - Curr Top Microbiol Immunol VL - 299 ID - Biebricher2006 ER - TY - JOUR AU - Domingo, E. AU - Martin, V. AU - Perales, C. AU - Grande-Perez, A. AU - Garcia-Arriaza, J. AU - Arias, A. PY - 2006 DA - 2006// TI - Viruses as quasispecies: biological implications JO - Curr Top Microbiol Immunol VL - 299 ID - Domingo2006 ER - TY - JOUR AU - Romanova, L. I. AU - Gmyl, A. P. AU - Dzhivanian, T. I. AU - Bakhmutov, D. V. AU - Lukashev, A. N. AU - Gmyl, L. V. AU - Rumyantsev, A. A. AU - Burenkova, L. A. AU - Lashkevich, V. A. AU - Karganova, G. G. PY - 2007 DA - 2007// TI - Microevolution of tick-borne encephalitis virus in course of host alternation JO - Virology VL - 362 UR - https://doi.org/10.1016/j.virol.2006.12.013 DO - 10.1016/j.virol.2006.12.013 ID - Romanova2007 ER - TY - JOUR AU - Rico-Hesse, R. AU - Harrison, L. M. AU - Nisalak, A. AU - Vaughn, D. W. AU - Kalayanarooj, S. AU - Green, S. AU - Rothman, A. L. AU - Ennis, F. A. PY - 1998 DA - 1998// TI - Molecular evolution of dengue type 2 virus in Thailand JO - Am J Trop Med Hyg VL - 58 ID - Rico-Hesse1998 ER - TY - JOUR AU - Jenkins, G. M. AU - Worobey, M. AU - Woelk, C. H. AU - Holmes, E. C. PY - 2001 DA - 2001// TI - Evidence for the non-quasispecies evolution of RNA viruses [corrected] JO - Mol Biol Evol VL - 18 UR - https://doi.org/10.1093/oxfordjournals.molbev.a003900 DO - 10.1093/oxfordjournals.molbev.a003900 ID - Jenkins2001 ER - TY - JOUR AU - Holmes, E. C. AU - Moya, A. PY - 2002 DA - 2002// TI - Is the quasispecies concept relevant to RNA viruses? JO - J Virol VL - 76 UR - https://doi.org/10.1128/JVI.76.1.460-462.2002 DO - 10.1128/JVI.76.1.460-462.2002 ID - Holmes2002 ER - TY - JOUR AU - Wilke, C. O. AU - Forster, R. AU - Novella, I. S. PY - 2006 DA - 2006// TI - Quasispecies in time-dependent environments JO - Curr Top Microbiol Immunol VL - 299 ID - Wilke2006 ER - TY - JOUR AU - Eigen, M. PY - 1993 DA - 1993// TI - Viral quasispecies JO - Sci Am VL - 269 UR - https://doi.org/10.1038/scientificamerican0793-42 DO - 10.1038/scientificamerican0793-42 ID - Eigen1993 ER - TY - CHAP AU - Artsob, H. ED - Monath, T. P. PY - 1989 DA - 1989// TI - Powassan Encephalitis BT - The Arboviruses: Epidemiology and Ecology PB - CRC Press CY - CRC Press ID - Artsob1989 ER - TY - STD TI - National Center for Biotechnology Information2008. [http://www.ncbi.nlm.nih.gov/sites/entrez] UR - http://www.ncbi.nlm.nih.gov/sites/entrez ID - ref45 ER - TY - JOUR AU - Tamura, K. AU - Dudley, J. AU - Nei, M. AU - Kumar, S. PY - 2007 DA - 2007// TI - MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 JO - Mol Biol Evol VL - 24 UR - https://doi.org/10.1093/molbev/msm092 DO - 10.1093/molbev/msm092 ID - Tamura2007 ER - TY - JOUR AU - Kuno, G. AU - Chang, G. J. PY - 2005 DA - 2005// TI - Biological transmission of arboviruses: reexamination of and new insights into components, mechanisms, and unique traits as well as their evolutionary trends JO - Clin Microbiol Rev VL - 18 UR - https://doi.org/10.1128/CMR.18.4.608-637.2005 DO - 10.1128/CMR.18.4.608-637.2005 ID - Kuno2005 ER - TY - JOUR AU - Cook, S. AU - Bennett, S. N. AU - Holmes, E. C. AU - De Chesse, R. AU - Moureau, G. AU - de Lamballerie, X. PY - 2006 DA - 2006// TI - Isolation of a new strain of the flavivirus cell fusing agent virus in a natural mosquito population from Puerto Rico JO - J Gen Virol VL - 87 UR - https://doi.org/10.1099/vir.0.81475-0 DO - 10.1099/vir.0.81475-0 ID - Cook2006 ER - TY - STD TI - Fisher's exact test2008. [http://www.quantitativeskills.com/sisa/statistics/fisher.htm] UR - http://www.quantitativeskills.com/sisa/statistics/fisher.htm ID - ref49 ER -