Figure 5

Bootscan analysis as in Figure 4, employing prototype HPeV strains as query sequences. A, BNI-788st (note a slight difference in co-segregation graph as opposed to Figure 4, due to a larger sliding window size of 600 bp in this analysis); B, HPeV-1 prototype strain Harris; C, HPeV-2 prototype strain Williams; D, HPeV-3 prototype strain A308-99; E, HPeV-3 prototype strain Can82853-01; F, HPeV-4 prototype strain K251176-02; G, HPeV-4 prototype strain T75-4077; H, HPeV-5 prototype strain T92-15; I, HPeV-5 prototype strain CT86-6760; J, HPeV-6 prototype strain NII-561-2000; K, HPeV-6 prototype strain BNI-67; L, color legend. In each panel, each coloured graph represents the degree of phylogenetic co-segregation with the query type in a 600 bp sliding analysis window, centered around the nucleotide position given on the x-axis. A bootstrapped phylogenetic analysis was conducted every 50 bp.