Table 2 List of virus sequences obtained using the Flav100F/Flav200R primer set [42,43].
From: Universal primers that amplify RNA from all three flavivirus subgroups
Virus abbreviation | Virus name | Lab reference | Strain Information | Genbank reference number |
|---|---|---|---|---|
ALFV | Alfuy virus | A5-76 | MRM392/9 | EU303181 |
APOIV | Apoi | Tc902 | kitaoka-> canals ->NIMR | EU303182 |
BANV | Banzi | Tc802 | P12 (11/12/74) | EU303183 |
BBV | Bukalasa bat | Tc270 | BP111 | EU303184 |
BSQV | Bussuquara | Tc836 | BE An 4073 | EU303185 |
CIV | Carey Island | Tc960 | p10-1215 | EU303186 |
CPCV | Cacipacore | Tc925 | Be An 327600 | EU303187 |
CRV | Cowbone Ridge | Tc611 | 3228 | EU303188 |
DBV | Dakar bat | Tc317 | p6 24/4/75 | EU303189 |
DENV1 | Dengue virus 1 | EF2005 | Â | EU303190 |
DENV2 | Dengue virus 2 | EF2005 | New Guinea C | EU303191 |
DENV4 | Dengue virus 4 | EF2005 | Â | EU303192 |
EBV | Entebbe bat | Tc854 | 221171 | EU303193 |
EHV | Edge Hill | A2-41 | c281 | EU303194 |
GGYV | Gadgets Gully | A5-66 | CS 122 | EU303195 |
IGUV | Iguape | Tc888 | SP An 71686 | EU303196 |
ILHV | Ilheus | Tc837 | B52456 (8/9/59) | EU303197 |
ITV | Israel turkey meningoencephalitis | Tc140 | Sent from Israel in 1959 | EU303198 |
JEV | Japanese encephalitis | Tc367 | Â | EU303199 |
JUGV | Jugra | Tc877 | P9-314 | EU303200 |
JUTV | Jutiapa | Tc901 | JG 128 | EU303201 |
KADV | Kadam | Tc649 | ArMp 6640 | EU303202 |
KOUV | Koutango | Tc519 | 13/11/75 Passage 8 | EU303203 |
KSIV | Karshi | Tc192 | 30517 (p sm 5) | EU303204 |
KUNV | Kunjin | A6-60 | MRM61C | EU303205 |
LIV | Louping ill | Tc537 | Isle of Mull (pig) | EU303206 |
SSEV | Spanish Sheep encephalomyelitis | Tc532 | 87-2617 [42] | EU303207 |
TSEV | Turkish sheep Encephalitis | Tc530 | TTE/80 [42] | EU303208 |
MEAV | Meaban | Tc647 | Brest/Ar/T 715 | EU303209 |
MMLV | Montana myotis leukoencephalitis | Tc770 | 13302 | EU303210 |
MODV | Modoc | Tc866 | 3321 | EU303211 |
MVEV | Murray Valley encephalitis | A3-68 | 1–51 (1992) | EU303212 |
NEGV | Negishi subtype (LIV) | Tc643 | From Dr Shope – P8 11/3/60 | EU303213 |
NJLV | Naranjal | Tc904 | 25008 22506-8 (Harvard 9/3/83) | EU303214 |
NMPV | New Mapoon Virus | Â | CY1014 [43] | EU303215 |
NTAV | Ntaya | Tc554 | Original 2/3/72 | EU303216 |
POWV | Powassan | Tc189 | Canadian isolate 1968 | EU303217 |
PPBV | Phnom Penh bat | Tc322 | Cambodia (A-38D) | EU303218 |
RBV | Rio Bravo | Tc877 | US Bat p9 3360 18/4/68 | EU303219 |
RFV | Royal Farm | Tc959 | EG Art 371 | EU303220 |
ROCV | Rocio | TC896 | SP H 34675 | EU303223 |
SABV | Saboya | Tc897 | IPD/RV 4600 62116 | EU303221 |
SEPV | Sepik | Â | Â | EU303222 |
SLEV | St Louis Encephalitis | Tc884 | Â | EU303242 |
SOKV | Sokoluk | Tc898 | Harvard 12/5/74 | EU303224 |
SPOV | Spondweni | Tc875 | 30240 | EU303225 |
SREV | Samarez Reef | Â | Â | EU303226 |
STRV | Stratford virus | B5-11 | C338 | EU303227 |
SVV | Sal Vieja | Tc955 | 78 TWM 106 | EU303228 |
TABV | Tamana bat | Tc885 | Trinidad Tr127154 | EU303229 |
TBEV | Tick-borne encephalitis | Â | Neudoerfl | EU303230 |
TBEV-Eu | Western tick-borne encephalitis | Tc616 | Hypr | EU303231 |
TBEV-FE | Far Eastern Tick borne encephalitis | Tc576 | Vasilchenko | EU303232 |
TMUV | Tembusu | Tc865 | N2 revived 14/6/82 | EU303233 |
TYUV | Tyuleniy | Tc310 | 6017 3 Arch Rock | EU303234 |
UGSV | Uganda S | Tc767 | 3/4/8? Isolated sept 1971 | EU303235 |
USUV | Usutu | Tc523 | SAR 1776 | EU303236 |
WESSV | Wesselsbron | Tc368 | GEN 3 p18 12/9/74 (p17 1972) 17/3/71 rec | EU303237 |
WNV | West Nile | Tc504 | 99-349040-31A (NY-99) | EU303238 |
YFV | Yellow Fever | Tc7 | H203410 | EU303239 |
YOKV | Yokose | Tc880 | Oita-36 | EU303240 |
ZIKV | Zika | Tc867 | MR766 (p4 15/9/76) | EU303241 |