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Table 2 Splice sites in donor 4 HBV as predicted by NetGene2.

From: Occult hepatitis B infection: an evolutionary scenario

Donor splice sites
  pos 5'->3' phase strand confidence 5' exon intron 3'
1 459 1 + 0.83 GACTGTCAAG^GTATGTTGCC
2 2448 0 + 0.31 GAATCTCAAT^GTTAGTATTC
3 2472 0 + 0.75 GACTCATAAG^GTGGGGAACT
4 2986 0 + 0.99 CGCCAACAAG^GTAGGAGCTG
Acceptor splice sites
  pos 5'->3' phase strand confidence 5' intron exon 3'
1 202 1 + 0.57 CGTGTTACAG^GCGGGGTTTT
2 488 2 + 0.93 CTAATTTCAG^GATCCTCAAC
3 504 0 + 0.07 CAACCACCAG^CACGGGACCC
4 707 2 + 0.17 TGGTTCGCAG^GGCTTTCCCC
5 734 2 + 0.26 TGGCTTTCAG^TTATATGGAC
6 1304 2 + 0.25 TTGCTCGCAG^CAGGTCTGGA
7 1307 2 + 0.28 CTCGCAGCAG^GTCTGGAGCA
8 1384 1 + 0.26 TGGCTGCTAG^GCTGTGCTGC
9 1979 1 + 0.82 TTTCCTTCAG^TACGAGATCT
10 1985 1 + 0.14 TCAGTACGAG^ATCTTCTAGA
11 2335 2 + 0.18 ACTTCCGGAG^GTTGCTGTTG
12 2349 1 + 0.31 CTGTTGTTAG^AGGACGAGGC
13 2351 0 + 0.19 GTTGTTAGAG^GACGAGGCAG
14 2357 0 + 0.19 AGAGGACGAG^GCAGGTCCCC
15 2361 1 + 0.19 GACGAGGCAG^GTCCCCTAGA
16 2370 1 + 0.19 GGTCCCCTAG^AAGAAGAACT
17 2373 1 + 0.19 CCCCTAGAAG^AAGAACTCCC
18 2376 1 + 0.19 CTAGAAGAAG^AACTCCCTCG
19 2394 1 + 0.37 CGCCTCGCAG^ACGAAGGTCT
20 2838 0 + 0.07 TGGGAACAAG^ATCTACAGCA
21 2846 2 + 0.18 AGATCTACAG^CATGGGGCAG
22 2856 0 + 0.19 CATGGGGCAG^AATCTATCCA
23 2870 2 + 0.19 TATCCACCAG^CAATCCTCTG
24 2901 0 + 0.18 CGACCACCAG^TTGGATCCAG
25 2911 1 + 0.07 TTGGATCCAG^CCTTCAGAGC
  1. The 202 acceptor site is mentioned in bold.