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Table 2 Splice sites in donor 4 HBV as predicted by NetGene2.

From: Occult hepatitis B infection: an evolutionary scenario

Donor splice sites

 

pos 5'->3'

phase

strand

confidence

5' exon intron 3'

1

459

1

+

0.83

GACTGTCAAG^GTATGTTGCC

2

2448

0

+

0.31

GAATCTCAAT^GTTAGTATTC

3

2472

0

+

0.75

GACTCATAAG^GTGGGGAACT

4

2986

0

+

0.99

CGCCAACAAG^GTAGGAGCTG

Acceptor splice sites

 

pos 5'->3'

phase

strand

confidence

5' intron exon 3'

1

202

1

+

0.57

CGTGTTACAG^GCGGGGTTTT

2

488

2

+

0.93

CTAATTTCAG^GATCCTCAAC

3

504

0

+

0.07

CAACCACCAG^CACGGGACCC

4

707

2

+

0.17

TGGTTCGCAG^GGCTTTCCCC

5

734

2

+

0.26

TGGCTTTCAG^TTATATGGAC

6

1304

2

+

0.25

TTGCTCGCAG^CAGGTCTGGA

7

1307

2

+

0.28

CTCGCAGCAG^GTCTGGAGCA

8

1384

1

+

0.26

TGGCTGCTAG^GCTGTGCTGC

9

1979

1

+

0.82

TTTCCTTCAG^TACGAGATCT

10

1985

1

+

0.14

TCAGTACGAG^ATCTTCTAGA

11

2335

2

+

0.18

ACTTCCGGAG^GTTGCTGTTG

12

2349

1

+

0.31

CTGTTGTTAG^AGGACGAGGC

13

2351

0

+

0.19

GTTGTTAGAG^GACGAGGCAG

14

2357

0

+

0.19

AGAGGACGAG^GCAGGTCCCC

15

2361

1

+

0.19

GACGAGGCAG^GTCCCCTAGA

16

2370

1

+

0.19

GGTCCCCTAG^AAGAAGAACT

17

2373

1

+

0.19

CCCCTAGAAG^AAGAACTCCC

18

2376

1

+

0.19

CTAGAAGAAG^AACTCCCTCG

19

2394

1

+

0.37

CGCCTCGCAG^ACGAAGGTCT

20

2838

0

+

0.07

TGGGAACAAG^ATCTACAGCA

21

2846

2

+

0.18

AGATCTACAG^CATGGGGCAG

22

2856

0

+

0.19

CATGGGGCAG^AATCTATCCA

23

2870

2

+

0.19

TATCCACCAG^CAATCCTCTG

24

2901

0

+

0.18

CGACCACCAG^TTGGATCCAG

25

2911

1

+

0.07

TTGGATCCAG^CCTTCAGAGC

  1. The 202 acceptor site is mentioned in bold.