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Table 4 Compilation of consensus sequences of the RdRp for the Picornavirales Honeybee viruses sequenced to date for the domains identified by Koonin & Dolja [17].

From: The use of RNA-dependent RNA polymerase for the taxonomic assignment of Picorna-like viruses (order Picornavirales) infecting Apis mellifera L. populations

Virus

Family/Genus

Domain I

Domain II

Domain III

Domain IV

Domain V

Domain VI

Domain VII

Domain VIII

KBV

Dicistroviridae

DTLKDERRPIE K

VF SNGPMDFSIAFRMY YLGFIAHLMENR

I GTNVYSQDWSK

G DFSTFDGSLN

THSQP SGNPATTPLNCFINSMGLRMCFSI

LVSY GDDNVI

QDVQY LK RK

P L CMDTILEM

ABPV

Dicistroviridae

DTLKDERRPIE K

VF SNGPMDFSITFRMY YLGFIAHLMENR

I GTNVYSQDWHK

G DFSTFDGSLN

THSQP SGNPATTPLNCFINSMGLRMVFEL

IVSY GDDNVI

EDVQY LK RK

P L SMDTILEM

IAPV

Dicistroviridae

DTLKDERRPIE K

VF SNGPMDFSIAFRMY YLGFIAHLMENR

I GTNVYSGDWSK

G DFSTFDGSLN

THSQP SGNPATTPLNCFINSMGLRMCFAI

MVSY GDDNVI

KDVQY LK RK

P L CMDTILEM

BQCV

Dicistroviridae

DTLKDERKPKHK

MF SNGPIDYLVWSKMYFNPIVAVLSELK

VGSNVYSTDWDV

G DFEGFDASEQ

CKSLP SGHYLTAIINSVFVNLVMCLVFME

IVAY GDDHVV

EDVSY LK RN

P L SLDVVLEM

SBV

Iflavirus

DTLKDERKLPE K

VFCNPPIDYIVSMRQY YMHFVAAFMEQR

VGINVQSTEWTL

I DYSNFGPGFN

KCGSP SGAPITVVINTLVNILYIFVAWET

LFCY GDD LIM

LNSTF LK HG

A L AWSSINDT

DWV

Iflavirus

DCLKDTCLPVE K

IF SISPVQFTIPFRQY YLDFMASYRAAR

I GIDVNSLEWTN

G DYKNFGPGLD

PCGIP SGSPITDILNTISNCLLIRLAWLG

LVCY GDDLIM

QTATF LK HG

N L DKVSVEGT

VDV

Iflavirus

DCLKDTCLPVE K

IF SISPVQFTIPFRQY YLDFMASYRAAR

I GIDVNSLEWTN

G DYKNFGPGLD

PCGIP SGSPITDILNTISNCLLIRLAWQG

LVCY GDDLIM

QTATF LK HG

N L DKVSIEGT

KV

Iflavirus

DCLKDTCLPVE K

IF SISPVQFTIPFRQY YLDFMASYRAAR

I GIDVNSLEWTN

G DYKNFGPGLD

PCGIP SGSPITDILNTISNCLLIRLAWLG

LVCY GDDLIM

QTATF LK HG

N L DKVSVEGT

CBPV

Unassigned

    

EGTRCSGDPHTSIGNGFINAFIIWLCLRK

SAHE GDD GIV

  
  1. Bold type and underline type indicating 100 and > 75% amino acid conservation for domains I-IV, VII-VIII respectively.
  2. Bold type and underline type indicating 100 and > 77.8% amino acid conservation for domains I-IV & VII-VIII respectively.