The use of RNA-dependent RNA polymerase for the taxonomic assignment of Picorna-like viruses (order Picornavirales) infecting Apis mellifera L. populations

Table 2 Consensus sequences of the RdRp for members of the Picornavirales for the domains identified by Koonin & Dolja [17]. Conserved amino acids are highlighted and any conserved amino acid properties.

Virus Family/Genus	Domain I	Domain II	Domain III	Domain IV	Domain V	Domain VI	Domain VII	Domain VIII
Picornaviridae	XXX KD E LRXXX	XXXXXXXXXXXXX R XXXXXXXXXXXXXXX	X G XXP-XXXXXX	XDXXXXDXXXX	XGXXPS GXXXTXXXNXXXNXXXXXXXX	XXX Y GDD XXX	XXXX FLKR X	XXXXXXXXXX
Comoviridae	EXX KD E XLXXR	XFXXLXXXXNXXXRXXFLXXXXXXX-XXR	VGXXXXXXEWXX	CDYXXFDGXXX	XXGIXXGXXLTVXXNSXXNEXLXXXXX	XXX Y GDD NLI	XXXD FLKR X	XXXXXXXXXX
Sadwavirus	ACA KD E KTXXR	IFEILPFXXNIXXRXYXXFXMQXXM-XXH	VGXNVYSXSWDX	GDYXGFDTXTP	XGGTPS GFAXTVXINSVVNXFYLXWXW	XSX Y GDD NXV	XEXD FLKR X	PLXKXXIEER
Cheravirus	DFP KD E KTXXK	LFXILPVDYNILVRKYFLSFVSXXM-XXH	VGIDXXSNEWSI	GDYSRFDGITP	TSGIPS GFPLTVIVNSLVNXFFXHFXY	YAX Y GDD NLX	EKVD FLKR X	PLNXVNITER
Sequiviridae	ECX KD E RRXLX	XFXILXXEXNXXXRXXFXDFXXXVM-XXR	VGINPXSXEWSD	GDXXXFDGXXX	XXGXPS GFXMTVIFNSFXNXXXXXXAW	XXX Y GDD NXV	XXXX FLKR X	PLXKXSIEEX
Dicistroviridae	XXL KD XXXXXX	X F XXXXXXXXXXXYXXXXXXXXXXX-XXX	XGXNXXSXXWXX	G D XXXXDXXXX	XXXXPS GXXXTXXXNXXXXXXXXXXXX	XXX Y GDD XXX	XXXXXX KR X	PXXXXXXXXX
Iflavirus	XXX KD XXXXXX	XXXXXPXXXXXXX R XXXXXFXXXXX-XXX	XGXXXXXXX W XX	X D YXXXXXXXX	XXGXXXGXXXTXXXNXXXNXXXXXXXX	XXXX GDD XXX	XXXXX L XXX	XXXXXXXXXX
Marnaviridae	ATK KD E ARLIG	TFYAASMNVIMAVRKYFCPVLQALK-ANP	IGTNAFGKDWAD	GDYSSFDMSHN	IGWVMS GVPLTAELSSTLNQIYMRVVW	LIV Y GDD NNA	EDAE FLKR L	PLSWDSINKR
Properties		2 2 3 2 2	1 4	4 4	1 55		413	2

X: variable position within family/genus
-: deletion
1: Aliphatic amino acid
2: Hydrophobic amino acid
3: Basic amino acid
4: Aromatic amino acid
5: Neutral amino acid
Bold type and underline type indicating 100 and > 75% amino acid conservation respectively.

ISSN: 1743-422X