From: Cloning of full genome sequence of hepatitis E virus of Shanghai swine isolate using RACE method
Primer name | Nucleotide position | Nucleotide sequence (5'-3') |
---|---|---|
HE0ES | 104-84 | CGGAGTTGGCCGCTGCTAGAG |
HE0EA | 482–501 | TGTACT(G)TTTGCTGCTGAGAC |
HE0IS | 225-203 | ATTGGGTGATTCCACAG(A)AACCTC |
HE0IA | 236–256 | ATCCACAAC(T)GAGCTT(C)GAGCAG |
HE1ES | 11–32 | TATGTGGTCGACGCCATGGAGG |
HE1EA | 528-509 | GCCCTTTATTCACTGCACGA |
HE1IA | 573-554 | ATACCGTGGCGAGCCATTGC |
HE2ES | 482–501 | TGTACTTTTGCTGCTGAGAC |
HE2EA | 956–975 | ACAGGGACGGCATGAAATGT |
HE2IS | 437–454 | CTTCCACCTGT(C)T(C)GAT(C)CGG |
HE2IA | 1000-983s | AAGCATA(G)AGCCTGTCCCA |
HE3ES | 671–692 | CGTGCA(T)GTG(A)ATTACATAT(C)GAGG |
HE3EA | 1336-1317 | CCACCGG(T)CGAA(G)CACTGG(A)GCAT |
HE3IS | 742–762 | GATCCGT(G)ACC(G)ACT(C)AAGGTCAC |
HE3IA | 1314-1293 | AACTG(C)CAA(G)CTGA(G)CGA(G)CCAGGGA |
HE4ES | 984–1005 | GGGACAGGCTTATGCTTTTTGG |
HE4EA | 1528-1508 | TGCCTCATTATCATAACCCTG |
HE4IS | 956-975 | ACGTTTCATGCCGTCCTGT |
HE4IA | 1703-1684 | GGCCGTCG(A)GCA(G)TCAGAG(A)ACC(T) |
HE5ES | 1331-1348 | CGGTGGT(C)TG(A)TCTGCC(T)GGC |
HE5EA | 1792-1746 | GTTGAG(A)AAGGTT(C)TTATTG(A) |
HE5IS | 1310–1329 | C(G)AGTTT(C)TATGCCCAGTGTCG |
HE5IA | 1803-1785 | GACAG(A)C(G)ACATAC(T)TGCTCT(C)G |
HE6ES | 1508–1528 | CAGGGT(C)TATGAT(C)AAT(C)GAGGC |
HE6EA | 2529-2510 | GGGAAC(A)CGT(C)TGA(G)TAGAAT(A)GC |
HE6IS | 1679–1700 | GTTGAG(A)GTC(T)TCTGAT(C)GCC(T)GACG |
HE6IA | 2477-2457 | GGTTA(G)GAT(C)GCATTA(G)ACCAGCC |
HE7ES | 2028–2048 | TGTGGTAC(T)T(C)AC(T)CCTGAGGGGC |
HE7EA | 2144-2123 | CTCTACACT(C)CGG(T)ACCTGGTCGG |
HE7IS* | 2830–2850 | GTAAGGGCTGGAAGGGTGGGC |
HE7IA* | 2913-2893 | ACTTCAGTGGCGGAGTCTAAC |
HE8ES | 2753–2772 | GCCTGGGAACGTAACCACCG |
HE8EA | 3366-3347 | GTCTGGATC(T)TTT(C)GGGTACGC |
HE8IS | 2714–2733 | GCCGGC(T)ATATATAAGGTC(A)CC |
HE8IA | 3438-3416 | GCCTGGGTG(A)AAT(C)ACCAA(G)CTTCT(C)G |
HE9ES | 3209–3228 | GGTGAC(T)CCC(T)AAT(C)AAT(C)AAATCCC |
HE9EA | 3948-3929 | GGCGCTGCCATACGGCAGTG |
HE9IS | 3312–3334 | GATGC(T)CCGGCG(A)GAT(C)GTCTGTGAG |
HE9IA | 3810-3791 | GGTCGA(G)TGGCCAAGC(T)TCCTC |
HE10ES | 3764–3781 | CAGTTTAGTGCT(C)TAC(T)CAG |
HE10EA | 4432-4413 | ATCATTCTCAAAAACCTTAC |
HE10IS | 3587–3605 | ACG(T)GAGAAG(A)TGTGTGGTG(C)G |
HE10IA | 4518-4496 | CACTCC(T)TCCATGATTATACACTC |
HE11ES | 4290–4311 | TGTTC(T)GGCCCA(C)TGGTTT(C)CGCGC |
HE11EA | 4752-4733 | CGATAGTCACTACAGAGCAC |
HE11IS | 4355–4375 | TATGGTGATGCA(G)TATGAG(A)GAC |
HE11IA | 4736-4717 | GCACAACAGAATCATCTCCC |
HE12ES | 4607–4625 | TGGAAGAAA(G)CAT(C)TCTGGTG |
HE12EA | 5253-5233 | CCGGTGGCGCGGGCAGCATAG |
HE12IS | 4496–4518 | GAGTGTATAATCATGGAG(A)GAGTG |
HE12IA | 5347–5366 | GGTTGGATGAATATAGGGGA |
HE13ES | 4977-4997 | CGAATGTGGCTCAGGTTTGTG |
HE13EA | 5451-5431 | GCCAAGCGGAACCGAGTGGAC |
HE13IS | 5020–5039 | CGGTGTTAGCCCTGGCTTGG |
HE13IA | 5392-5371 | GTTGGAATGTCGGATGCGAAGG |
HE14ES | 5347–5366 | TCCCCTATATTCATCCAACC |
HE14EA | 5956-5934 | TGATTG(T)CGATAG(A)TGCAGGCGCTC |
HE14IS | 5233–5252 | CTATGCTGCCCGCGCCACCG |
HE14IA | 5980-5957 | GAGGTCTCAACT(C)GAG(A)CGCCAA(G)CCC |
HE15ES | 5922–5942 | GTGATT(C)CCTAGT(C)GAGCGCCTG |
HE15EA | 6415-6397 | GTCGGCTCGCCATTGGCTG |
HE15IS | 5877–5896 | ACTGATGTCCGC(G)ATC(T)CTTGT |
HE15IA | 6453-6433 | CCTGCTGAGCATTCTCGACTG |
HE16ES | 6336–6357 | CTC(A)CCGACAGAATTGATTTCGT |
HE16EA | 7005-6985 | CAGAG(A)TGA(G)GGT(G)GCA(G)AGGACAC |
HE16IS | 6271–6292 | TTGGTGAG(A)GTT(C)GGC(T)CGTGGTAT |
HE16IA | 7074-7054 | CAGGGCAA(G)AG(A)ATCATCG(A)AAAG |
HE17ES* | 6763–6782 | CGCTCACTACTATCCAGCAG |
HE17IS* | 6787–6808 | CTAAGACCTTCTTTGTTCTGCC |
HE17A | GTTTTCCCAGTCACGACTTTTTTTTTTTTTTT | |
*: the primers were designed according to isolate in this study. |