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Table 1

From: Cloning of full genome sequence of hepatitis E virus of Shanghai swine isolate using RACE method

Primer name

Nucleotide position

Nucleotide sequence (5'-3')

HE0ES

104-84

CGGAGTTGGCCGCTGCTAGAG

HE0EA

482–501

TGTACT(G)TTTGCTGCTGAGAC

HE0IS

225-203

ATTGGGTGATTCCACAG(A)AACCTC

HE0IA

236–256

ATCCACAAC(T)GAGCTT(C)GAGCAG

HE1ES

11–32

TATGTGGTCGACGCCATGGAGG

HE1EA

528-509

GCCCTTTATTCACTGCACGA

HE1IA

573-554

ATACCGTGGCGAGCCATTGC

HE2ES

482–501

TGTACTTTTGCTGCTGAGAC

HE2EA

956–975

ACAGGGACGGCATGAAATGT

HE2IS

437–454

CTTCCACCTGT(C)T(C)GAT(C)CGG

HE2IA

1000-983s

AAGCATA(G)AGCCTGTCCCA

HE3ES

671–692

CGTGCA(T)GTG(A)ATTACATAT(C)GAGG

HE3EA

1336-1317

CCACCGG(T)CGAA(G)CACTGG(A)GCAT

HE3IS

742–762

GATCCGT(G)ACC(G)ACT(C)AAGGTCAC

HE3IA

1314-1293

AACTG(C)CAA(G)CTGA(G)CGA(G)CCAGGGA

HE4ES

984–1005

GGGACAGGCTTATGCTTTTTGG

HE4EA

1528-1508

TGCCTCATTATCATAACCCTG

HE4IS

956-975

ACGTTTCATGCCGTCCTGT

HE4IA

1703-1684

GGCCGTCG(A)GCA(G)TCAGAG(A)ACC(T)

HE5ES

1331-1348

CGGTGGT(C)TG(A)TCTGCC(T)GGC

HE5EA

1792-1746

GTTGAG(A)AAGGTT(C)TTATTG(A)

HE5IS

1310–1329

C(G)AGTTT(C)TATGCCCAGTGTCG

HE5IA

1803-1785

GACAG(A)C(G)ACATAC(T)TGCTCT(C)G

HE6ES

1508–1528

CAGGGT(C)TATGAT(C)AAT(C)GAGGC

HE6EA

2529-2510

GGGAAC(A)CGT(C)TGA(G)TAGAAT(A)GC

HE6IS

1679–1700

GTTGAG(A)GTC(T)TCTGAT(C)GCC(T)GACG

HE6IA

2477-2457

GGTTA(G)GAT(C)GCATTA(G)ACCAGCC

HE7ES

2028–2048

TGTGGTAC(T)T(C)AC(T)CCTGAGGGGC

HE7EA

2144-2123

CTCTACACT(C)CGG(T)ACCTGGTCGG

HE7IS*

2830–2850

GTAAGGGCTGGAAGGGTGGGC

HE7IA*

2913-2893

ACTTCAGTGGCGGAGTCTAAC

HE8ES

2753–2772

GCCTGGGAACGTAACCACCG

HE8EA

3366-3347

GTCTGGATC(T)TTT(C)GGGTACGC

HE8IS

2714–2733

GCCGGC(T)ATATATAAGGTC(A)CC

HE8IA

3438-3416

GCCTGGGTG(A)AAT(C)ACCAA(G)CTTCT(C)G

HE9ES

3209–3228

GGTGAC(T)CCC(T)AAT(C)AAT(C)AAATCCC

HE9EA

3948-3929

GGCGCTGCCATACGGCAGTG

HE9IS

3312–3334

GATGC(T)CCGGCG(A)GAT(C)GTCTGTGAG

HE9IA

3810-3791

GGTCGA(G)TGGCCAAGC(T)TCCTC

HE10ES

3764–3781

CAGTTTAGTGCT(C)TAC(T)CAG

HE10EA

4432-4413

ATCATTCTCAAAAACCTTAC

HE10IS

3587–3605

ACG(T)GAGAAG(A)TGTGTGGTG(C)G

HE10IA

4518-4496

CACTCC(T)TCCATGATTATACACTC

HE11ES

4290–4311

TGTTC(T)GGCCCA(C)TGGTTT(C)CGCGC

HE11EA

4752-4733

CGATAGTCACTACAGAGCAC

HE11IS

4355–4375

TATGGTGATGCA(G)TATGAG(A)GAC

HE11IA

4736-4717

GCACAACAGAATCATCTCCC

HE12ES

4607–4625

TGGAAGAAA(G)CAT(C)TCTGGTG

HE12EA

5253-5233

CCGGTGGCGCGGGCAGCATAG

HE12IS

4496–4518

GAGTGTATAATCATGGAG(A)GAGTG

HE12IA

5347–5366

GGTTGGATGAATATAGGGGA

HE13ES

4977-4997

CGAATGTGGCTCAGGTTTGTG

HE13EA

5451-5431

GCCAAGCGGAACCGAGTGGAC

HE13IS

5020–5039

CGGTGTTAGCCCTGGCTTGG

HE13IA

5392-5371

GTTGGAATGTCGGATGCGAAGG

HE14ES

5347–5366

TCCCCTATATTCATCCAACC

HE14EA

5956-5934

TGATTG(T)CGATAG(A)TGCAGGCGCTC

HE14IS

5233–5252

CTATGCTGCCCGCGCCACCG

HE14IA

5980-5957

GAGGTCTCAACT(C)GAG(A)CGCCAA(G)CCC

HE15ES

5922–5942

GTGATT(C)CCTAGT(C)GAGCGCCTG

HE15EA

6415-6397

GTCGGCTCGCCATTGGCTG

HE15IS

5877–5896

ACTGATGTCCGC(G)ATC(T)CTTGT

HE15IA

6453-6433

CCTGCTGAGCATTCTCGACTG

HE16ES

6336–6357

CTC(A)CCGACAGAATTGATTTCGT

HE16EA

7005-6985

CAGAG(A)TGA(G)GGT(G)GCA(G)AGGACAC

HE16IS

6271–6292

TTGGTGAG(A)GTT(C)GGC(T)CGTGGTAT

HE16IA

7074-7054

CAGGGCAA(G)AG(A)ATCATCG(A)AAAG

HE17ES*

6763–6782

CGCTCACTACTATCCAGCAG

HE17IS*

6787–6808

CTAAGACCTTCTTTGTTCTGCC

HE17A

 

GTTTTCCCAGTCACGACTTTTTTTTTTTTTTT

*: the primers were designed according to isolate in this study.

  
  1. Position and nucleotide sequence of oligonucleotide primers for PCR. The nucleotide position is in accordance with the SH-SW-zs1 isolate in this study. In the primer name, ES, EA, IS and IA mean "external sense", "external antisense", "internal sense" and "internal antisense", respectively. Letters in parentheses indicate degenerate bases.