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Table 1 Primers and probes used for Lightcycler RT-PCR and Reverse Line Blot hybridization assay.

From: Development of a real-time RT-PCR and Reverse Line probe Hybridisation assay for the routine detection and genotyping of Noroviruses in Ireland

Primers

Primer Sequence

Reference

COG1F

CGY TGG ATG CGN TTY CAT GA

[7]

G1NVR

ACC CAR CCA TTA TAC ATY TG

 

COG2F

CAR GAR BCN ATG TTY AGR TGG ATG AG

[7]

G2NVR

ACC NGC ATA NCC RTT RTA CAT TC

 

Probes

  

GI/1

TCT TGC AAT GGA TCC TGT RGC RG

 

GI/2

GAA CCC GTG GCY GGG CCA AC

 

GI/3

CCA GAG GCA AAY ACA GCT GAG

 

GI/4

TGA CCC TGT GGC TGG CTC CTC

 

GI/5

ATG CTG AAC CAC TGC CWC TTG AT

 

GI/6

CAA ATT TCA ATG GAY CCT GTT GCG

 

GI/7

GGT AGT GGG CGC CGC AAC C

 

GI/8

TGC GGT TGC TAC TGC CGG CCA

 

GII/1

CGA GAC GAT GGC MCT CGA ACC G

 

GII/2

TAT AGA CCC TTG GAT TAG AGC A

 

GII/3

CAA TGG CGC TAG ABC CAG TGG CG

 

GII/4

GAC GCC AAC CCA TCT GAT GGG TC

 

GII/5

GGT GGG GGC GTC TTT AGC C

 

GII/6

CTC AAT CGC AGC TCC TGT YGT

 

GII/7

GCA TCG CTG GCG ACA CCA GTT G

 

GII/8

TCA ACC ATG AGG TCA TGG CCA TA

 

GII/9

CCC CGG GTG AGT TCT TGC TYG A

 

GII/10

TTC CCC TGG AGA AGT ACT CCT

 

GII/12

CGA ACT AAA TCC ATA CCT AGC ACAC

 

GII/13

CAG TGG CGG GAC AAA CCA AC

 

GII/14

CTC TCC TGG AGA ACT CCT ACT TGA T

 

GII/15

GAA GTC TTG CCT TTA GAG CCC GTC

 

GII/16

CAG TTG CGG GAG CTT CAA TCG CT

 

GII/17

CCT CCC TTT GGA ACC AGT TGC

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