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Table 3 Primers for amplification of the glycoprotein B gene

From: Discovery of herpesviruses in multi-infected primates using locked nucleic acids (LNA) and a bigenic PCR approach

Primer set

Name of primer

PCR round

Sequence 5'- 3'

Product length $ (bp)

RH-gB

2759s

1

CCTCCCAGGTTCARTWYGCMTAYGA

700

 

2762as

 

CCGTTGAGGTTCTGAGTGTARTARTTRTAYTC

 
 

2760s

2

AAGATCAACCCCAC(N/I#)AG(N/I)GT(N/I)ATG

500

 

2761as

 

GTGTAGTAGTTGTACTCCCTRAACAT(N/I)GTYTC

 

LC-gB

2753s

1

CCATCCAGATCCARTWYGC(N/I)TAYGA

650

 

2756as

 

GATGTTCTGCGCCTRRWARTTRTA

 
 

2754s

2

TGGCTGCCAAGCG(N/I)(N/I)T(N/I)GG(N/I)GA

460

 

2755as

 

GATGTTCTGCGCCTGRWARTTRTAYTC

 

CM-gB

2743s

1

CGCAAATCGCAGA(N/I)KC(N/I)TGGTG

330

 

2746as

 

TGGTTGCCCAACAG(N/I)ATYTCRTT

 
 

2744s

2

TTCAAGGAACTCAGYAARAT(N/I)AAYCC

250

 

2745as

 

CGTTGTCCTC(N/I)CC(N/I)ARYTG(N/I)CC

 

CM-MDBP

3730s

1

TGTGGCTTCTCATGCTTvCA[n/i]TT[n/i]TG

560

 

3730as

 

GTTGAGGCTCCG[n/i]TCsAC[n/i]CC

 
 

3731s

2

CTATCTCGAGCATCG[n/i]TTyCAyAAC

350

 

3731as

 

AAAAGTACCCAATCTG[n/i]CCrAAsTG

 
  1. # I = Inosine
  2. $ approximate values