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Table 3 Reliability of references genes for each viral – cell pair

From: Determination of suitable housekeeping genes for normalisation of quantitative real time PCR analysis of cells infected with human immunodeficiency virus and herpes viruses

Virus

HIV-1BaL

HIV-1NL4.3

HIV-1NL4.3

HIV-1RFW

HSV-1NC1

HSV-1NC1

VZVSchenke

VZVSchenke

CMVTowne

CMVToledo

Overall

Cell

MDDC

HELA

HUT78

HUT78

HELA

HEP2

MDDC

HFF

HFF

HFF

-

1st

PP1A

PP1A

SDHA

PP1A

HMBS

HMBS

PP1A*

PP1A

PP1A*

PP1A

PP1A

2nd

GAPDH

GAPDH

TBP

EEFIG

PGK1

GAPDH

GAPDH*

EEFIG

PGK1*

GAPDH

GAPDH

3rd

HMBS

TBP

B2M

PGK1

SDHA

PGK*

TBP

SDHA

GAPDH**

PGK1

SDHA

4th

TBP

EEFIG

HMBS

SDHA

PP1A

B2M*

EEF1G

GAPDH

EEF1G**

EEFIG

TBP

5th

B2M

PGK1

PP1A

BACT

TBP

PPIA

B2M

TBP

SDHA**

SDHA

EEF1G

6th

18sRNA

HMBS*

PGK1

GAPDH

B2M

EEF1G

BACT

B2M

TBP

TBP

B2M

7th

EEF1G

B2M*

EEFIG

TBP

18sRNA

SDHA

SDHA

BACT

B2M

B2M*

PGK1

8th

PGK1

SDHA

GAPDH

HMBS

GAPDH

TBP

HMBS

HMBS

BACT

BACT*

HMBS

9th

SDHA

BACT

18sRNA

B2M

BACT

BACT

PGK1

PGK1

HMBS

HMBS

BACT

10th

BACT

18sRNA

BACT

18sRNA

EEFIG

18sRNA

18sRNA

18sRNA

18sRNA

18sRNA

18sRNA

  1. Where two or more genes were equally reliable these are labelled with * or **.