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Table 3 Reliability of references genes for each viral – cell pair

From: Determination of suitable housekeeping genes for normalisation of quantitative real time PCR analysis of cells infected with human immunodeficiency virus and herpes viruses

Virus HIV-1BaL HIV-1NL4.3 HIV-1NL4.3 HIV-1RFW HSV-1NC1 HSV-1NC1 VZVSchenke VZVSchenke CMVTowne CMVToledo Overall
Cell MDDC HELA HUT78 HUT78 HELA HEP2 MDDC HFF HFF HFF -
1st PP1A PP1A SDHA PP1A HMBS HMBS PP1A* PP1A PP1A* PP1A PP1A
2nd GAPDH GAPDH TBP EEFIG PGK1 GAPDH GAPDH* EEFIG PGK1* GAPDH GAPDH
3rd HMBS TBP B2M PGK1 SDHA PGK* TBP SDHA GAPDH** PGK1 SDHA
4th TBP EEFIG HMBS SDHA PP1A B2M* EEF1G GAPDH EEF1G** EEFIG TBP
5th B2M PGK1 PP1A BACT TBP PPIA B2M TBP SDHA** SDHA EEF1G
6th 18sRNA HMBS* PGK1 GAPDH B2M EEF1G BACT B2M TBP TBP B2M
7th EEF1G B2M* EEFIG TBP 18sRNA SDHA SDHA BACT B2M B2M* PGK1
8th PGK1 SDHA GAPDH HMBS GAPDH TBP HMBS HMBS BACT BACT* HMBS
9th SDHA BACT 18sRNA B2M BACT BACT PGK1 PGK1 HMBS HMBS BACT
10th BACT 18sRNA BACT 18sRNA EEFIG 18sRNA 18sRNA 18sRNA 18sRNA 18sRNA 18sRNA
  1. Where two or more genes were equally reliable these are labelled with * or **.