37
|
1158
|
1194
|
386
|
398
|
1st cys-his box
| | |
37
|
1314
|
1350
|
438
|
450
|
p1-p6 cleavage site F449..L450
|
440
|
445
|
36
|
1087
|
1122
|
362
|
374
|
p2 helix, most of p2 A364..M377
|
364
|
373
|
36
|
1349
|
1384
|
450
|
461
|
L domain P455..P459
|
448
|
456
|
30
|
74
|
103
|
25
|
34
|
residues essential to binding to cell membrane
|
25
|
36
|
28
|
1302
|
1329
|
434
|
443
|
most of p1 F433..F448
|
436
|
442
|
27
|
17
|
43
|
6
|
14
|
myristoylation
|
8
|
13
|
26
|
562
|
587
|
187
|
196
|
bridges CA H3 and CA H4 helices
|
189
|
195
|
25
|
322
|
346
|
107
|
115
|
part of MA H5 helix T97..A120
|
107
|
113
|
25
|
478
|
502
|
159
|
167
|
bridges CA H1 and CA H2 helices
| | |
25
|
734
|
758
|
245
|
253
|
bridges CA H6 helix and downstream B-sheet
| | |
25
|
930
|
954
|
310
|
318
|
CA H9 helix, endocytosis signal T311..Q324
|
310
|
318
|
25
|
1022
|
1046
|
341
|
349
|
CA H11 helix L343..C350
|
343
|
351
|
25
|
1404
|
1428
|
468
|
476
|
T471A mutation leads to incomplete separation from host cell membrane
| | |
24
|
356
|
379
|
119
|
126
|
labile structure at end of MA
|
123
|
128
|
24
|
838
|
861
|
279
|
287
|
required for dimer interface
|
278
|
284
|
24
|
1146
|
1169
|
382
|
390
|
g helix, near start p7
| | |
23
|
772
|
794
|
257
|
265
|
CA H7, potential NEC cleavage site
|
256
|
268
|
23
|
1189
|
1211
|
396
|
404
|
1st cys-his box
| | |
22
|
1253
|
1274
|
418
|
425
|
2cd cys-his box
|
416
|
427
|
21
|
1
|
21
|
0
|
7
|
minimum signal required for myristoylation
|
0
|
7
|
21
|
268
|
288
|
89
|
96
|
loop with highly variable charge btwn MA H4-H5
|
90
|
100
|
21
|
361
|
381
|
120
|
127
|
near end of MA
|
123
|
128
|
21
|
1238
|
1258
|
413
|
419
|
2cd cys-his box C412..H421
|
406
|
421
|
21
|
1274
|
1294
|
425
|
431
|
ends at p7-p1 cleavage site N432..F433
|
426
|
433
|
20
|
990
|
1009
|
330
|
336
|
CA H10 helix, endocytosis signal P328..L337
|
426
|
433
|
19
|
63
|
81
|
21
|
27
|
basic residues essential to binding P23..H33
|
23
|
33
|
19
|
159
|
177
|
53
|
59
|
MA H3 helix, mutations affect virus assembly
|
51
|
57
|
19
|
192
|
210
|
64
|
70
|
MA H3 helix, mutations affect virus assembly
|
62
|
71
|
19
|
305
|
323
|
102
|
108
|
part of MA H5 helix, potential PDZ domain binding
| | |
19
|
956
|
974
|
319
|
325
|
CA H9 helix, endocytosis signal Q311..Q324
|
316
|
323
|
19
|
1060
|
1078
|
353
|
359
|
G-rich segment at end CA
| | |
19
|
1427
|
1445
|
476
|
482
|
end of Gag-PolTF
|
476
|
481
|
18
|
468
|
485
|
156
|
162
|
CA H1 helix
| | |
18
|
541
|
558
|
180
|
186
|
CA H3 helix, D184 essential to mature capsid
| | |
18
|
886
|
903
|
295
|
301
|
MHR
|
299
|
306
|
18
|
919
|
936
|
306
|
312
|
deletion causes major defect in particle formation
|
304
|
310
|
18
|
956
|
973
|
319
|
324
|
CA H9 helix, endocytosis signal T311..Q324
|
316
|
323
|
18
|
1389
|
1406
|
463
|
469
|
ubiquitin-gag conjugates found L449..Q500
|
460
|
470
|
18
|
1461
|
1478
|
487
|
493
|
vpr packaging L489..F493
|
487
|
493
|