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Table 7 MIMRs ≥ 33% begin and end at cleavage sites (bold) and sites that have related functions in the translated protein

From: Imperfect DNA mirror repeats in the gag gene of HIV-1 (HXB2) identify key functional domains and coincide with protein structural elements in each of the mature proteins

DNA mIMR len   protein   protein function
begin..end    begin..end   
1-atg..tga-704 704 begin MA, M-1 start MA
   end CA, D-235 CypA binding site – CA uncoating exposed loop virion core surface
9-gag..gag-778 770 begin MA, R-4 min myristoylation signal
   end CA, E-260 H7, largest component viral core
35-aat..taa-811 777 begin MA, E-12 AP-3 binding
      calmodulin binding
      plasma membrane binding
   end CA, N-271 H7, largest component viral core
43-cga..tgc-1135 1093 begin MA, R-15 AP-3 binding
      calmodulin binding
      plasma membrane binding
   end p2, Q-379 p2-NC cleavage site +1AA stage 1 Gag & Gag-Pol
153-aga..gga-1228 1076 begin MA, E-52 -2AA essential to trimerization & virus assembly
   end NC, K-410 motif crucial to NC-RT binding
302-tag..gct-1293 992 begin MA, L-101 start, H5 helix related to viral entry
   end NC, A-431 NC-p1 cleavage Gag
      NC-GagTF cleavage Gag-Pol
337-aaa..taa-1459 1123 begin MA, K-113 nuclear localization signal
   end p6, F-487 end GagTF
360-tga..aat-1501 1142 begin MA, D-121 end, H5 helix related to viral entry
   end p6, $-501 end Gag (end p6)
400-ata..taa-1503 1104 begin MA, I-134 MA-CA cleavage + 1AA Gag & Gag-Pol
   end p6, $-501 end Gag (end p6)