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Table 3 mIMRs in gag that are ≥50% symmetrical

From: Imperfect DNA mirror repeats in the gag gene of HIV-1 (HXB2) identify key functional domains and coincide with protein structural elements in each of the mature proteins

Rank m-IMR ID protein length DNA positions protein positions overlaps
1 #1-gag MA 95 0270-aa..ca-0364 091-RI..DT-122  
2 #2-gag CA 87 0742-gg..tg-0828 248-GW..RM-276  
3 #3-gag NC-p1-p6 85 1256-aa..aa-1340 419-EG..GN-447  
  #4-gag MA 82 0266-at..ca-0347 089-HQ..AQ-116 ~#1-gag
  #5-gag CA 81 0758-at..ta-0838 253-NP..PT-280 ~#2-gag
4 #6-gag NC 81 1171-aa..ga-1251 391-KC..CG-417  
5 #7-gag p2 80 1065-ac..ca-1144 356-PG..GN-382  
  #8-gag CA 77 0764-ct..cc-0840 255-PP..PT-280 ~#2-gag
  #9-gag gag 77 1100-tg..gt-1176 367-MS..KC-392 ~#7-gag
6 #10-gag CA 76 0812-at..ta-0887 271-NK..DY-296  
7 #11-gag CA 75 0920-ag..ga-0994 307-EQ..KT-332  
  #12-gag MA 74 0299-ct..ac-0372 100-AL..GH-124 ~#1-gag
  #13-gag MA 71 0303-ag..ca-0373 102-DK..HS-125 ~#1-gag
8 #14-gag CA 69 0985-ga..ag-1053 329-DC..QG-351  
9 #15-gag CA 64 0543-ca..aa-0606 181-PQ..LK-202  
  #16-gag CA 64 0810-aa..aa-0873 271-NK..KE-291 ~#10-gag
10 #17-gag p6 64 1362-gc..ag-1425 455-PT..QK-475  
  #18-gag MA 63 0265-ca..ac-0327 089-HQ..QN-109 ~#1-gag
11 #1-NC NC 59 1209-aa..aa-1267 404-NC..QM-423  
12 #2-NC NC 47 1153-aa..ca-1199 385-NQ..GH-400  
  1. ID numbers for each mIMR (e.g. #1-gag) are based on rank by length (#1 being the longest). MIMRs terminated by reverse dinucleotides are bold.