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Table 6 Iridoviridae Core Genes

From: Comparative genomic analysis of the family Iridoviridae: re-annotating and defining the core set of iridovirus genes

 

Gene Namea

FV3

TFV

ATV

SGIV

GIV

LCDV-1

LCDV-C

ISKNV

RBIV

OSGIV

IIV-6

MIV

1.

Putative replication factor and/or DNA binding-packing

1R

105R

91R

116R

79R

162L

181R

61L

57L

60L

282R

79L

2.

DNA-dep RNA pol-II Largest subunit

8R

8R

6R

104L

71L

16L

191R

28L

29L

31L

176R, 343L

90L

3.

Putative NTPase I

9L

9L

7L

60R

36R

132L

075L

63L

59L

63L

22L

87L

4.

ATPase-like protein

15R

16R

83R

134L

90L

54R

114L

122R

116R

119R

75L

88R

5.

Helicase family

21L

21L

78R

54R

32R

6L

7L

56L

54L

57L

67R

4R

6.

D5 family NTPase involved in DNA replication

22R

22R

77L

52L

31L

128L

80L

109L

101L

106L

184R

121R

7.

Putative tyrosin kinase/lipopolysaccharide modifying enzyme

27R

29R

58R

78L+81L b

52L

195R

173R

61L, 114L

57L, 106Lb

60L, 111L

179R, 439L

35R

8.

NIF-NLI interacting factor

37R

40R

64R

61R

37R

82L

148L

5L

6L

6L

355R

104R

9.

Unknown

41R

45R

69R

57L

35L

163R

235R

76L

72L

75L

295L

16R

10.

Myristilated membrane protein

53R

55R

51L

88L

59L

67L

158R

7L

8L

8L

118L, 458R

6R

11.

DNA pol Family B exonuclease

60R

63R

44L

128R

87R

135R

203L

19R

20R

22R

37L

120L

12.

DNA-dep RNA pol-II second largest subunit

62L

65L

43R

73L

46L

25L

25R

34R

33R

36R

428L

9R

13.

Ribonucleotide reductase small subunit

67L

71L

38R

47L

26L

27R

41L

24R

26R

27R

376L

48L

14.

Ribonuclease III

80L

85L

25R

84L

55L

137R

187R

87R

83R

85R

142R

101R

15.

Proliferating cell nuclear antigen

84R

90R

20L

68L

41L

3L

197L

112R

103R b

109R

436L

60L

16.

Major capsid protein

90R

96R

14L

72R

45R

147L

43L

6L

7L

7L

274R

14L

17.

Putative XPPG-RAD2-type nuclease

95R

101R

10L

97L

66L

191R

169R

27L

28L

30L

369L

76L

18.

Serine-threonine protein kinase

19R

19R

80L

39L

21L

10L

45R

55L

53L

56L

380R

10L

19.

Serine-threonine protein kinase

57R

59R

47L

150L

100L

143L

178L

13R

13R

15R

98R

98L

  1. The Iridoviridae core genes are shown.
  2. aORFs that have been added or altered are highlighted in bold
  3. bPotentially frameshifted ORF