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Table 4 Re-annotation of SGIV and GIV of the Ranavirus genus

From: Comparative genomic analysis of the family Iridoviridae: re-annotating and defining the core set of iridovirus genes

SGIVa

Start

Stopc

aad

GIVa

Start

Stopc

aad

14L

12773

12348

141

1.3L

2020

1595

141

15L

13000

12821

59

1.5L

2247

2068

59

16L

14289

13048

413

2L

3536

2295

413

18R

14317

15174

285

3R

3564

4421

285

19R

15196

16224

342

4R

4443

5399

318

20L

17246

16278

322

5L

6421

5453

322

21L

17725

17306

139

6L

6900

6475

141

22L

18277

17777

166

7L

7486

6950

178

24L

18774

18319

151

8L

7983

7528

151

25L

20488

18956

510

9L

9682

8165

505

26R

20567

22267

556

10R

9761

11461

566

28L

23363

22350

337

11L

12559

11546

337

29L

24445

23447

332

12L

13659

12643

338

30L

25635

24610

341

13L

14850

13816

344

31L

27160

26144

338

14L

16384

15362

340

32.5L

28666

27609

352

15L

17904

16846

352

33L

29760

28726

344

16L

19010

17964

348

34L

30161

29823

112

16.5L

19411

19073

112

35L

31388

30261

375

17L

20638

19511

375

36L

32515

31526

329

18L

21835

20771

354

37L

33696

32668

342

19L

23016

21988

342

38L

34236

33724

170

20L

23556

23044

170

39L

37417

34262

1051

21L

26738

23583

1051

41L

37978

37547

143

22L

27296

26865

143

42R

38058

38285

75

-

-

-

-

43R

38285

40288

667

23R

27608

29605

665

45L

41090

40362

242

24L

30407

29679

242

46L

41866

41120

248

25L

31204

30467

245

47L

43063

41909

384

26L

32401

31247

384

48L

43489

43214

91

27L

32824

32549

91

49L

44002

43535

155

28L

33336

32857

159

50L

44695

44033

220

29L

34029

33367

220

51L

45563

44868

231

30L

34896

34201

231

52L

37997

35097

968

31L

37997

35097

966

54R

48777

49424

215

32R

38100

38747

215

55R

49447

50169

240

33R

38770

39492

240

56R

50198

50938

246

34R

39521

40261

246

57L

54510

51004

1168

35L

43833

40327

1168

59L

55000

54560

146

35.5L

44323

43391

146

60R

54967

57879

970

36R

44348

47200

950

61R

57914

58528

204

37R

47235

47849

204

62R

58593

59363

256

38R

47914

48708

264

64R

59415

61133

572

39R

48760

50478

572

65R

61268

61510

80

39.5R

50614

50856

80

66R

61603

61845

80

39.7R

50949

51191

80

67L

62482

61907

191

40L

51829

51254

191

68L

63334

62516

272

41L

52681

51863

272

69L

64967

63321

548

42L

54314

52668

548

70R

64994

65452

152

43R

54341

54799

152

71R

65483

66307

274

44R

54830

55654

274

72R

66404

67795

463

45R

55751

57142

463

73L

71185

67874

1103

46L

60532

57221

1103

74R

68472

68738

88

47R

57819

58085

88

75R

71239

71775

178

48R

60586

61122

178

76L

72715

71858

285

49L

62064

61207

285

77L

73747

72839

302

50L

63096

62188

302

-

-

-

-

51L

62944

62282

220

78L+81L a

76809

76246/73855

984

52L

66156

63202

984

82L

77592

76924

222

53L

66939

66271

222

83R

77672

79009

445

54R

67019

68356

445

84L

80193

79066

375

55L

69540

68413

375

85R

80251

80529

92

56R

69598

69876

92

86R

80591

81055

154

57R

69938

70402

154

87R

81385

82032

215

58R

70728

71375

215

88L

84187

82667

506

59L

73355

71835

506

89L

85420

84248

390

60L

74588

73416

390

90L

86627

85506

373

61L

75794

74673

373

91L

87886

86750

378

62L

77051

75915

378

92L

89216

88086

376

63L

78373

77240

377

93L

90497

89280

405

64L

79654

78437

405

95R

90635

91111

158

64.5L

80265

79792

157

96R

91148

91618

156

65R

80301

80771

156

97L

92774

91626

382

66L

81926

80778

382

98R

92428

93231

267

67R

81580

82383

267

99R

93244

93492

82

67.5R

82380

82646

88

101R

93753

94694

313

68R

82906

83847

313

102L

95007

94774

77

69L

84161

83928

77

103R

95092

95385

97

70R

84246

84539

97

104L

99252

95446

1268

71L

88406

84600

1268

105R

95498

95731

77

72R

84652

84885

77

107R

99308

100453

381

73R

88462

89088

208

111R

100766

101533

255

74R

89401

90168

255

112R

101588

102655

355

75R

90223

91326

367

114L

103050

102712

112

77.5L

91721

91383

112

115R

103122

103580

152

78R

91793

92251

152

116R

103700

104476

258

79R

92371

93147

258

117L

104733

104575

52

79.5L

93401

93241

52

118R

104795

105754

319

80R

93463

94422

319

119R

105799

106050

83

80.5R

94467

94718

83

120L

106525

106103

140

81L

95162

94779

127

121R

106615

106869

84

81.5R

95291

95547

84

122L

107599

106967

210

82L

96275

95643

210

123L

108740

107652

362

83L

97416

96328

362

124R

108863

109399

178

83.5L

98976

97684

130

125R

109474

110028

184

84R

98151

98705

184

126R

110101

110658

185

85R

98692

99330

212

127R

110731

111252

173

86R

99403

99924

173

128R

112041

115070

1009

87R

100788

103817

1009

129L

115490

115308

60

87.5L

104245

103884

119

131R

115749

116303

184

88R

104499

105053

184

132R

116321

117148

275

89R

105071

105898

275

134L

118498

117527

323

90L

107244

106273

323

135L

118885

118547

112

90.5L

107631

107258

123

136R

118946

119260

104

91R

107692

108006

104

137R

119282

120667

461

92R

108028

109413

461

138L

120907

120713

64

92.3L

109653

109457

64

139R

121013

121324

103

92.5R

109757

110068

103

140R+141R b

121397

122311/124558

 

93R

110141

113554

1137

143L

124882

124643

79

94L

113878

113639

79

144R

124963

125421

152

95R

113959

114417

152

145R

125480

125977

165

96R

114476

114973

165

146L

127052

126078

324

97L

116050

115076

324

147L

128221

127187

344

98L

117220

116186

344

148R

128324

128803

159

99R

117323

117802

159

149R

128843

129220

125

99.5R

117842

118219

125

150L

130827

129301

508

100L

119826

118300

508

151L

131435

130848

195

101L

120434

119847

195

152R

131534

132772

412

102R

120533

121771

412

153L

132661

132089

190

103L

121660

121088

190

154R

132788

133081

97

103.5R

121787

122080

97

155R

133172

134899

575

104R

122172

123896

574

156L

135860

135048

270

105L

124852

124043

269

157R

135948

136472

174

106R

124940

125464

174

158L

136944

136528

138

106.5L

125936

125520

138

159R

137020

137511

163

106.7R

126012

126503

163

160L

137996

137508

162

107L

126988

126500

162

161.5L

138598

138309

95

107.5L

127561

127296

87

162L

139822

138674

382

108L

128797

127649

382

0.5L

1029

0/140141-140020

391

109L

130138

128963

391

1L

1971

1057

304

110L

131080

130166

304

3R

2018

3163

381

111R

131127

132272

381

4L

4332

3235

365

113L

133442

132345

365

5L

5542

4400

380

114L

134652

133510

380

6R

5570

6349

259

115R

134680

135453

257

7L

7339

6416

307

116L

136425

135520

301

8L

7886

7194

230

117L

136972

136280

230

9L

8444

7980

154

118L

137530

137066

154

10L

8888

8517

123

118.5L

137974

137603

123

11L

9132

8944

62

119L

138218

138030

62

12L

12293

9219

1024

120.5L

138307/139793

1/1540

1008

  1. aORFs that have been added or altered are highlighted in bold. If a previously annotated ORF is not listed in the table, it has been deleted.
  2. bPotentially frameshifted ORF
  3. cWhere an ORF has a potential sequencing error resulting in a frameshift mutation, 2 stop codons are provided in the format X/Y. The first number represents the actual physical stop in the reported sequence. The second number is the proposed stop if a sequencing error occurred.
  4. dLength of ORF in amino acids