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Table 4 Re-annotation of SGIV and GIV of the Ranavirus genus

From: Comparative genomic analysis of the family Iridoviridae: re-annotating and defining the core set of iridovirus genes

SGIVa Start Stopc aad GIVa Start Stopc aad
14L 12773 12348 141 1.3L 2020 1595 141
15L 13000 12821 59 1.5L 2247 2068 59
16L 14289 13048 413 2L 3536 2295 413
18R 14317 15174 285 3R 3564 4421 285
19R 15196 16224 342 4R 4443 5399 318
20L 17246 16278 322 5L 6421 5453 322
21L 17725 17306 139 6L 6900 6475 141
22L 18277 17777 166 7L 7486 6950 178
24L 18774 18319 151 8L 7983 7528 151
25L 20488 18956 510 9L 9682 8165 505
26R 20567 22267 556 10R 9761 11461 566
28L 23363 22350 337 11L 12559 11546 337
29L 24445 23447 332 12L 13659 12643 338
30L 25635 24610 341 13L 14850 13816 344
31L 27160 26144 338 14L 16384 15362 340
32.5L 28666 27609 352 15L 17904 16846 352
33L 29760 28726 344 16L 19010 17964 348
34L 30161 29823 112 16.5L 19411 19073 112
35L 31388 30261 375 17L 20638 19511 375
36L 32515 31526 329 18L 21835 20771 354
37L 33696 32668 342 19L 23016 21988 342
38L 34236 33724 170 20L 23556 23044 170
39L 37417 34262 1051 21L 26738 23583 1051
41L 37978 37547 143 22L 27296 26865 143
42R 38058 38285 75 - - - -
43R 38285 40288 667 23R 27608 29605 665
45L 41090 40362 242 24L 30407 29679 242
46L 41866 41120 248 25L 31204 30467 245
47L 43063 41909 384 26L 32401 31247 384
48L 43489 43214 91 27L 32824 32549 91
49L 44002 43535 155 28L 33336 32857 159
50L 44695 44033 220 29L 34029 33367 220
51L 45563 44868 231 30L 34896 34201 231
52L 37997 35097 968 31L 37997 35097 966
54R 48777 49424 215 32R 38100 38747 215
55R 49447 50169 240 33R 38770 39492 240
56R 50198 50938 246 34R 39521 40261 246
57L 54510 51004 1168 35L 43833 40327 1168
59L 55000 54560 146 35.5L 44323 43391 146
60R 54967 57879 970 36R 44348 47200 950
61R 57914 58528 204 37R 47235 47849 204
62R 58593 59363 256 38R 47914 48708 264
64R 59415 61133 572 39R 48760 50478 572
65R 61268 61510 80 39.5R 50614 50856 80
66R 61603 61845 80 39.7R 50949 51191 80
67L 62482 61907 191 40L 51829 51254 191
68L 63334 62516 272 41L 52681 51863 272
69L 64967 63321 548 42L 54314 52668 548
70R 64994 65452 152 43R 54341 54799 152
71R 65483 66307 274 44R 54830 55654 274
72R 66404 67795 463 45R 55751 57142 463
73L 71185 67874 1103 46L 60532 57221 1103
74R 68472 68738 88 47R 57819 58085 88
75R 71239 71775 178 48R 60586 61122 178
76L 72715 71858 285 49L 62064 61207 285
77L 73747 72839 302 50L 63096 62188 302
- - - - 51L 62944 62282 220
78L+81L a 76809 76246/73855 984 52L 66156 63202 984
82L 77592 76924 222 53L 66939 66271 222
83R 77672 79009 445 54R 67019 68356 445
84L 80193 79066 375 55L 69540 68413 375
85R 80251 80529 92 56R 69598 69876 92
86R 80591 81055 154 57R 69938 70402 154
87R 81385 82032 215 58R 70728 71375 215
88L 84187 82667 506 59L 73355 71835 506
89L 85420 84248 390 60L 74588 73416 390
90L 86627 85506 373 61L 75794 74673 373
91L 87886 86750 378 62L 77051 75915 378
92L 89216 88086 376 63L 78373 77240 377
93L 90497 89280 405 64L 79654 78437 405
95R 90635 91111 158 64.5L 80265 79792 157
96R 91148 91618 156 65R 80301 80771 156
97L 92774 91626 382 66L 81926 80778 382
98R 92428 93231 267 67R 81580 82383 267
99R 93244 93492 82 67.5R 82380 82646 88
101R 93753 94694 313 68R 82906 83847 313
102L 95007 94774 77 69L 84161 83928 77
103R 95092 95385 97 70R 84246 84539 97
104L 99252 95446 1268 71L 88406 84600 1268
105R 95498 95731 77 72R 84652 84885 77
107R 99308 100453 381 73R 88462 89088 208
111R 100766 101533 255 74R 89401 90168 255
112R 101588 102655 355 75R 90223 91326 367
114L 103050 102712 112 77.5L 91721 91383 112
115R 103122 103580 152 78R 91793 92251 152
116R 103700 104476 258 79R 92371 93147 258
117L 104733 104575 52 79.5L 93401 93241 52
118R 104795 105754 319 80R 93463 94422 319
119R 105799 106050 83 80.5R 94467 94718 83
120L 106525 106103 140 81L 95162 94779 127
121R 106615 106869 84 81.5R 95291 95547 84
122L 107599 106967 210 82L 96275 95643 210
123L 108740 107652 362 83L 97416 96328 362
124R 108863 109399 178 83.5L 98976 97684 130
125R 109474 110028 184 84R 98151 98705 184
126R 110101 110658 185 85R 98692 99330 212
127R 110731 111252 173 86R 99403 99924 173
128R 112041 115070 1009 87R 100788 103817 1009
129L 115490 115308 60 87.5L 104245 103884 119
131R 115749 116303 184 88R 104499 105053 184
132R 116321 117148 275 89R 105071 105898 275
134L 118498 117527 323 90L 107244 106273 323
135L 118885 118547 112 90.5L 107631 107258 123
136R 118946 119260 104 91R 107692 108006 104
137R 119282 120667 461 92R 108028 109413 461
138L 120907 120713 64 92.3L 109653 109457 64
139R 121013 121324 103 92.5R 109757 110068 103
140R+141R b 121397 122311/124558   93R 110141 113554 1137
143L 124882 124643 79 94L 113878 113639 79
144R 124963 125421 152 95R 113959 114417 152
145R 125480 125977 165 96R 114476 114973 165
146L 127052 126078 324 97L 116050 115076 324
147L 128221 127187 344 98L 117220 116186 344
148R 128324 128803 159 99R 117323 117802 159
149R 128843 129220 125 99.5R 117842 118219 125
150L 130827 129301 508 100L 119826 118300 508
151L 131435 130848 195 101L 120434 119847 195
152R 131534 132772 412 102R 120533 121771 412
153L 132661 132089 190 103L 121660 121088 190
154R 132788 133081 97 103.5R 121787 122080 97
155R 133172 134899 575 104R 122172 123896 574
156L 135860 135048 270 105L 124852 124043 269
157R 135948 136472 174 106R 124940 125464 174
158L 136944 136528 138 106.5L 125936 125520 138
159R 137020 137511 163 106.7R 126012 126503 163
160L 137996 137508 162 107L 126988 126500 162
161.5L 138598 138309 95 107.5L 127561 127296 87
162L 139822 138674 382 108L 128797 127649 382
0.5L 1029 0/140141-140020 391 109L 130138 128963 391
1L 1971 1057 304 110L 131080 130166 304
3R 2018 3163 381 111R 131127 132272 381
4L 4332 3235 365 113L 133442 132345 365
5L 5542 4400 380 114L 134652 133510 380
6R 5570 6349 259 115R 134680 135453 257
7L 7339 6416 307 116L 136425 135520 301
8L 7886 7194 230 117L 136972 136280 230
9L 8444 7980 154 118L 137530 137066 154
10L 8888 8517 123 118.5L 137974 137603 123
11L 9132 8944 62 119L 138218 138030 62
12L 12293 9219 1024 120.5L 138307/139793 1/1540 1008
  1. aORFs that have been added or altered are highlighted in bold. If a previously annotated ORF is not listed in the table, it has been deleted.
  2. bPotentially frameshifted ORF
  3. cWhere an ORF has a potential sequencing error resulting in a frameshift mutation, 2 stop codons are provided in the format X/Y. The first number represents the actual physical stop in the reported sequence. The second number is the proposed stop if a sequencing error occurred.
  4. dLength of ORF in amino acids