Comparative genomic analysis of the family Iridoviridae: re-annotating and defining the core set of iridovirus genes

Eaton, Heather E; Metcalf, Julie; Penny, Emily; Tcherepanov, Vasily; Upton, Chris; Brunetti, Craig R

doi:10.1186/1743-422X-4-11

Virology Journal

Table 2 Re-annotation of the Megalocytivirus genus

From: Comparative genomic analysis of the family Iridoviridae: re-annotating and defining the core set of iridovirus genes

ISKNV^a	Start	Stop^c	aa^d	RBIV^a	Start	Stop^c	aa^d	OSGIV^a	Start	Stop^c	aa^d
1L	1270	134	378	1L	1270	134	378	1L	1270	134	378
2R	1394	2044	216	2R ^b	1394	1597/1781	67	2R	1394	1789	131
-	-	-	-	3R	1841	2056	71	3R	1849	2064	71
3L	2634	2077	185	4L	2605	2102	167	4L	2613	2110	167
4L	2890	2681	69	5L	2800	2624	58	5L	2808	2632	58
5L	3648	2893	251	6L	3541	2876	221	6L	3548	2883	221
6L	5155	3794	453	7L	5147	3786	453	7L	5154	3793	453
7L	6631	5174	485	8L	6621	5164	485	8L	6628	5171	485
8R	6669	8246	525	9R	6692	8239	515	9R	6699	8246	515
9R	8342	8503	53	10R	8335	8496	53	10R	8342	8503	53
10L	9054	8662	130	11L	9047	8655	130	11L/12L ^b	9055	8849/8662	130
11L	9311	9051	86	11.5L	9304	9044	86	13L	9312	9052	86
12R	9330	9659	110	12R	9323	9655	110	14R	9331	9663	110
13R	9669	11054	461	13R	9662	11059	465	15R	9670	11067	465
14R	11309	12268	319	14R	11314	12288	324	16R	11322	12296	324
15R	12278	13069	263	15R	12298	13089	263	17R	12302	13093	263
16L	13716	13129	195	16L	13733	13146	195	18L	13738	13151	195
17L	14095	13718	125	17L	14086	13748	112	19L	14088	13753	111
17.5R	14089	14325	78	18R	14171	14410	79	20R	14094	14351	85
18.5L ^b	14563	14233	109	19L	14648	14472	58	21L	14607	14431	58
19R	14579	17425	948	20R	14664	17510	948	22R	14623	17469	948
20L	17642	17454	62	21L	17756	17574	60	23L	17715	17533	60
21L	17900	17778	40	21.5L	18014	17892	40	24L	17973	17851	40
22L	19489	17990	499	22L	19714	18104	536	25L	19715	18063	550
23R	19562	22132	856	23R	19787	22204	805	26R	19788	22922	1044
24R	22300	23238	312	26R	23035	23973	312	27R	23207	24145	312
25R	23354	23779	141	27R	23997	24380	127	28R	24169	24696	175
26L	24145	23822	107	27.5L	24697	24377	106	29L	25013	24693	106
27L	25063	24167	298	28L	25615	24719	298	30L	25931	25035	298
28L	28559	25080	1159	29L	29138	25632	1168	31L	29454	25948	1168
29L	28814	28593	73	29.5L ^b	29362	29087/29145	91	32L	29682	29461	73
31.5L	29414	28884	176	30.5L	29957	29430	175	33.5L	30277	29750	175
32R	29447	30061	204	31R	29990	30622	210	34R	30310	30942	210
33L	31079	30138	313	32L	31654	30713	313	35L	31935	31033	300
34R	31144	34278	1044	33R	31700	34861	1053	36R	32018	35176	1052
35L	35508	34360	382	34L	36067	34934	377	37L	36382	35249	377
36R	35546	36601	351	35.5R	36061	37113	350	38R	36376	37431	351
37L	37950	36598	450	37L	38219	37110	369	39L	38777	37428	449
38L	39395	37959	478	38L	39974	38469	501	40L	40225	38786	479
39R	39439	40311	290	39.5R ^b	40012	40506/40857	164	41R	40290	41168	292
40L	41443	40304	379	41L	41995	40850	381	42L	42306	41161	381
41L	42788	41445	447	42L	43346	41997	449	43L	43657	42308	449
42R	42803	43396	197	43R	43361	43959	198	44R	43672	44271	199
43L	43842	43480	120	43.5L	44405	43975	142	45L	44717	44355	120
44L	44645	43845	266	44L	45208	44408	266	46L	45524	44724	266
45L	45564	44650	304	45L	46127	45213	304	47L	46443	45529	304
46L	46241	45558	227	46L	46804	46121	227	48L	47120	46437	227
47R	46401	46664	87	47R	47150	46887	87	49R	47280	47543	87
48R	46661	47005	114	47.5R ^b	47224	47433/47588	69	50R	47540	47893	117
49R	47021	47191	56	48.5R	47604	47774	56	51R	47909	48079	56
50L	47678	47250	142	49L	48270	47842	142	52L	48575	48147	142
51R	47733	47864	43	-	-	-	-	-	-	-	-
52L	48403	47951	150	50L	48999	48547	150	53L	49306	48854	150
53R	48405	48620	71	51R	49001	49195	64	54R	49308	49502	64
54L	49559	48633	308	52L	50173	49229	314	55L	50480	49536	314
55L	50508	49582	308	53L	51137	50196	313	56L	51444	50503	313
56L	51166	50519	215	54L	51795	51148	215	57L	52102	51455	215
57L	51433	51173	86	55L	52062	51802	86	58L	52369	52109	86
59L	52414	51749	221	56L	52839	52327	170	59L	53146	52634	170
61L	53162	52359	267	57L	53709	52903	268	60L	54016	53210	268
62L	56785	53159	1208	58L	57467	53706	1253	61L/62L ^b	55131	54013/53893	372
63L	59875	57227	882	59L	60567	57919	882	63L	60876	58228	882
64L	61393	59918	491	60L ^b	62102	60855/60635	415	64L	62416	60944	490
65L	61900	61439	153	61L	62611	62144	155	65L	62928	62458	156
66L	63025	61982	347	62L	63744	62662	360	66L	64061	62979	360
67L	63855	63271	194	63.5L	64446	63865	193	67.5L	64763	64182	193
68L	65329	63896	477	64L	65917	64484	477	69L	66234	64801	477
69L	66001	65336	221	65L ^b	66661	66215/65929	148	70L	66977	66246	243
70L	66331	66101	76	-	-	-	-	-	-	-	-
71L	68042	66432	536	68L	68529	67120	469	71L	68973	67417	518
72R	68173	69177	334	-	-	-	-	-	-	-	-
73R	69203	69622	139	69R ^b	68717	69191/69135	157	72R	69078	69497	139
74R	69669	70682	337	70R	69184	70203	339	73R	69546	70568	340
75L	71043	70777	88	71L	70573	70304	89	74L	70938	70669	89
76L	74017	71045	990	72L	73541	70575	988	75L	73912	70940	990
77R	74035	75369	444	73R	73559	74893	444	76R	73930	75264	444
78R	75366	75830	154	75R	74890	75354	154	77R	75261	75725	154
79L	76053	75832	73	76L	75580	75356	74	78L	75951	75727	74
-	-	-	-	77R	75664	76137	157	79R	76039	76512	157
80L	76368	76165	67	-	-	-	-	-	-	-	-
81R	76367	76864	165	78R	76150	76647	165	80R	76525	77022	165
82L	78007	76901	368	79L	77802	76696	368	81L	78177	77071	368
83R	78152	78418	88	80R	77827	78225	132	82R	78202	78600	132
84L	79881	78526	451	81L	79556	78252	434	83L	79931	78627	434
85R	79884	80486	200	82R	79643	80173	176	84R	80018	80548	176
86R	80483	80947	154	82.5R	80170	80637	155	84.5L	80545	81012	155
87R	80940	81710	256	83R	80603	81400	265	85R	80978	81775	265
88R	81717	83720	667	84R	81503	83425	640	86R/87R ^b	82234	83805/82279	523
90.5L	84663	83701	320	85L	84457	83630	275	88.5L	84811	83786	341
93L	85786	84860	308	86L	85504	84578	308	90L	85918	84992	308
94L	86296	85796	166	87L	86014	85514	166	91L	86428	85928	166
95L	87481	86321	386	88L	87202	86039	387	92L	87616	86453	387
96L	88298	87489	269	89.5L ^b	87601	87218/87210	127	93L	88361	87624	245
97.5L	88723	88232	163	90L	88443	87952	163	94L	88857	88366	163
99L	89097	88774	107	91L	88814	88491	107	95L	89229	88906	107
100L	89689	89144	181	92L	89515	88868	215	96L	90024	89377	215
101L	90251	89736	171	93.5L	89999	89470	175	97L	90508	89993	171
102R	90311	91753	480	94R	90068	91513	481	98R	90577	92022	481
103R	91760	92161	133	95.5R	91477	91935	152	99R	92029	92442	137
104R	92215	92991	258	96R	91994	92773	259	100R	92501	93280	259
105R	92993	93358	121	97R	92775	93146	123	101R	93282	93653	123
-	-	-	-	98R	93240	94127	295	102R	93747	94634	295
106L	94501	93482	339	99L	95042	94221	273	103L	95548	94676	290
108.5L	95093	94494	199	100.5L	95699	95068	209	104.5L	96217	95574	213
109L	97950	95185	921	101L	98557	95792	921	106L	99060	96298	920
110R	97997	98152	51	101.5L	98609	98764	51	107R	99113	99268	51
111L	99039	98149	296	102L	99657	98761	298	108L ^b	99885	99265/99849	206
112R	99059	99802	247	103R ^b	99677	100426/100422	249	109R	100183	100926	247
113R	99937	100290	117	104.5R	100493	100909	138	110R	100998	101414	138
114L	103159	100334	941	106L ^b	103615	102539/100953	358	111L	104041	101594	815
115R	103203	104213	336	108.5R	104050	104781	243	112R	104476	105486	336
116R	104219	105667	482	110R	105060	106493	477	113R	105547	106701	384
117L	106395	105721	224	111L	107221	106547	224	114L	107652	106978	224
118L	108093	106723	456	112L	108913	107549	454	115L	109299	107986	437
119R	108105	108392	95	113R	108931	109104	57	116R	109369	109656	95
120R	108424	108933	169	114R	109248	109637	129	117R	109687	110193	168
121L	109584	108934	216	115L	110419	109756	220	118L	110849	110214	211
122R	109594	110313	239	116R	110429	111148	239	119R	110859	111578	239
123R	110391	110576	61	117R	111226	111420	64	120R	111656	111850	64
124L	111351	110665	228	118L	112037	111576	153	121L	112625	111939	228

^aORFs that have been added or altered are highlighted in bold. If a previously annotated ORF is not listed in the table, it has been deleted.
^bPotentially frameshifted ORF
^cWhere an ORF has a potential sequencing error resulting in a frameshift mutation, 2 stop codons are provided in the format X/Y. The first number represents the actual physical stop in the reported sequence. The second number is the proposed stop if a sequencing error occurred.
^dLength of ORF in amino acids

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ISSN: 1743-422X

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