From: S1 gene sequence analysis of a nephropathogenic strain of avian infectious bronchitis virus in Egypt
Nucleotide identity (%) | Â | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 |  |  |
1 | Â | 74 | 73 | 97 | 98 | 98 | 99 | 76 | 95 | 75 | 68 | 72 | 77 | 74 | 76 | 98 | 78 | 1 | Egypt/F/03 |
2 | 71 | Â | 73 | 74 | 74 | 74 | 75 | 74 | 73 | 76 | 76 | 77 | 75 | 98 | 73 | 75 | 79 | 2 | Egypt/Beni-Suef/01 |
3 | 74 | 74 | Â | 73 | 77 | 73 | 74 | 72 | 71 | 99 | 97 | 82 | 70 | 76 | 76 | 78 | 84 | 3 | Egypt/D/89 |
4 | 97 | 71 | 73 | Â | 97 | 97 | 97 | 76 | 94 | 75 | 68 | 73 | 77 | 73 | 75 | 97 | 78 | 4 | H120 |
5 | 96 | 70 | 72 | 96 | Â | 97 | 94 | 76 | 95 | 79 | 75 | 81 | 77 | 73 | 75 | 96 | 77 | 5 | M41 |
6 | 96 | 71 | 73 | 96 | 95 | Â | 98 | 76 | 94 | 75 | 68 | 73 | 77 | 73 | 75 | 97 | 78 | 6 | Beaudette.US |
7 | 99 | 71 | 74 | 97 | 96 | 96 | Â | 76 | 95 | 74 | 69 | 73 | 78 | 75 | 76 | 98 | 79 | 7 | GX1-98.China |
8 | 70 | 69 | 75 | 70 | 69 | 71 | 71 | Â | 75 | 74 | 69 | 73 | 78 | 74 | 73 | 75 | 78 | 8 | B1648.Belgium |
9 | 90 | 70 | 72 | 91 | 90 | 89 | 90 | 68 | Â | 73 | 67 | 72 | 76 | 72 | 73 | 91 | 76 | 9 | Connecticut |
10 | 74 | 75 | 98 | 74 | 72 | 74 | 74 | 75 | 73 | Â | 91 | 82 | 73 | 76 | 76 | 78 | 84 | 10 | D274 |
11 | 74 | 75 | 94 | 73 | 72 | 73 | 74 | 76 | 74 | 94 | Â | 83 | 67 | 76 | 76 | 78 | 84 | 11 | D3896 |
12 | 72 | 73 | 81 | 72 | 71 | 72 | 72 | 77 | 70 | 82 | 83 | Â | 70 | 76 | 76 | 79 | 81 | 12 | Vic.S |
13 | 72 | 72 | 72 | 71 | 70 | 71 | 72 | 71 | 69 | 73 | 73 | 72 | Â | 75 | 93 | 77 | 76 | 13 | UK/4/91 |
14 | 68 | 97 | 73 | 68 | 68 | 68 | 69 | 66 | 67 | 73 | 73 | 69 | 71 | Â | 73 | 74 | 79 | 14 | Israel/720/99 |
15 | 71 | 68 | 72 | 69 | 68 | 70 | 71 | 69 | 67 | 73 | 73 | 71 | 88 | 69 | Â | 76 | 76 | 15 | IS/188/96/Var.1 |
16 | 97 | 71 | 73 | 96 | 93 | 96 | 97 | 70 | 84 | 73 | 73 | 72 | 72 | 70 | 71 | Â | 78 | 16 | IS/385/97 |
17 | 71 | 77 | 83 | 71 | 70 | 71 | 72 | 76 | 69 | 83 | 85 | 77 | 73 | 78 | 73 | 72 | Â | 17 | IS/585/98/Var.2 |
 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 |  |  |
Amino acid identity (%) | Â |