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Table 1B Probes for Epstein-Barr Virus genes

From: Quantitative profiling of housekeeping and Epstein-Barr virus gene transcription in Burkitt lymphoma cell lines using an oligonucleotide microarray

Oligo Name

nt

Transcript Length (bp)

Distance from 3' (bp)

Tm (°C)

GC (%)

Design

Sense Probe Sequence (5' to 3')

EBNA1_AD.1

60

1131

202

76.1

45.0

AD

TTTGAAGGATGCGATTAAGGACCTTGTTATGACAAAGCCCGCTCCTACCTGCAATATCAG

EBNA1_AD.2

60

1131

803

79.0

55.0

AD

GAGAGGTCGTGGACGTGGAGAAAAGAGGCCCAGGAGTCCCAGTAGTCAGTCATCATCATC

EBNA2_AD.1

60

1464

687

79.0

53.3

AD

GCACCCTCTTACTCATCAAAGCACCCCAAATGATCCAGATAGTCCAGAACCACGGTCCCC

EBNA3A_AD.1

60

1360

29

76.9

48.3

AD

GAAGCCATTCTCCGCAGGTTTCCACTAGATCTAAGAACACTTCTTCAAGCGATTGGAGCC

EBNA3C_AD.1

60

2973

129

79.2

53.3

AD

GACCTGCCCGGTGTTCCCAAGCTACTGCTGAAGCACAGGAGATTCTCAGTGACAATTCTG

EBNA3C_AD.2

60

2973

893

79.1

51.7

AD

TAAGGCCCAGCCCATAGAAAGTTCACACTTGAGTTCCATGTCGCCCACACAGCCGATATC

LMP1.70 mer

70

2038

813

88.3

47.1

PE

CTGTTCATCTTTGGCTGCTTACTTGTCTTCGGTATCTGGATCTACTTCTTGGAGATTCTCTGGCGGCTTG

LMP 2A&2B.70 mer

70

1196

53

94.5

54.3

PE

CCGACCCCATATCGCAACACTGTATAAAGAATGCCCACCAGATCGCCTGCCACTTCCACAGCAATGGCAC

LMP2_AD.1

60

1196

199

77.0

48.3

AD

AATGGCGACCGTCACTCGGACTATCAACCACTAGGAACCCAAGATCAAAGTCTGTACTTG

BZLF1.70 mer

70

1767

280

90.3

47.1

PE

ACGCACACGGAAACCACAACAGCCAGAATCGCTGGAGGAATGCGATTCTGAACTAGAAATAAAGCGATAC

gp85.70 mer

70

2121

90

93.3

51.4

PE

TCCACGTTCACTATCTGCTGCTGACCACCAACGGGACTGTCATGGAAATTGCGGGCCTGTATGAAGAAAGAG

gp85_AD.1

60

2121

491

76.8

48.3

AD

ATTATCCCGCTCATCAATGTGACATTCATAATCTCTAGTGACCGTGAGGTCCGAGGCTCG

gL_AD.1

60

414

294

77.7

48.3

AD

CGCGTTGGAAAACATTAGCGACATTTACCTGGTGAGCAATCAGACATGCGACGGCTTTAG

g42_AD.1

60

672

259

76.0

46.7

AD

CAACGCCCGATATTCTACCTGTGGTAACTAGAAATCTGAATGCCATTGAGTCCCTTTGGG

  1. AD: ArrayDesign; PE: Primer Express