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Table 3 Pfam hits for novel ORFs

From: Genetic diversity among five T4-like bacteriophages

ORF

Pfam Domain name

E value

44RRORF008c

Serine hydroxymethyltransferase

9.80E-180

44RRORF084c

TM2 domain

3.80E-14

44RRORF093c

Glutathionylspermidine synthase

8.30E-109

44RRORF097c

Prokaryotic N-terminal methylation motif

3.70E-09

44RRORF098c

SPFH domain/Band 7 family

1.10E-06

44RRORF109c

Glutaredoxin-like domain (DUF836)

0.016

44RRORF111c

Ribonucleotide reductase, small chain

4.00E-06

44RRORF130c

Prokaryotic dksA/traR C4-type zinc finger

4.30E-05

44RRORF168c

HD domain

0.34

44RRORF232c

Domain of unknown function (DUF1732)

0.35

44RRORF234c

Sodium:solute symporter family

2.60E-34

44RRORF238c

Putative metallopeptidase (SprT family)

0.33

Aeh1ORF004c

CYTH domain

0.14

Aeh1ORF010c

dUTPase

5.10E-25

Aeh1ORF025c

Carbohydrate binding domain

0.4

Aeh1ORF026c

Carbohydrate binding domain

0.12

Aeh1ORF040c

Prokaryotic N-terminal methylation motif

6.60E-09

Aeh1ORF062c

Putative metallopeptidase (SprT family)

0.00035

Aeh1ORF064c

SPFH domain/Band 7 family

2.40E-05

Aeh1ORF068c

Bacterial transferase hexapeptide (3 repeats)

0.32

Aeh1ORF110c

HD domain

0.0078

Aeh1ORF111c

UV-endonuclease UvdE

3.60E-20

Aeh1ORF131c

Poly(ADP-ribose) polymerase catalytic domain

0.026

Aeh1ORF132c

ADP-ribosylglycohydrolase

1.10E-05

Aeh1ORF154c

von Willebrand factor type A domain

0.22

Aeh1ORF157c

CreA protein

4.40E-09

Aeh1ORF227c

RyR domain

0.0054

Aeh1ORF230c

Bacterial regulatory proteins, lacI family

0.14

Aeh1ORF245c

GatB/Yqey domain

0.17

Aeh1ORF289c

Poly A polymerase family

9.00E-31

Aeh1ORF318w

Phage T4 tail fibre

8.10E-06

RB43ORF020c

LysM domain

1.70E-07

RB43ORF057w

DnaJ domain

2.70E-05

RB43ORF119c

von Willebrand factor type A domain

0.02

RB43ORF127c

C-5 cytosine-specific DNA methylase

1.20E-117

RB43ORF139c

SPFH domain/Band 7 family

3.80E-05

RB43ORF157c

PhoH-like protein PIN domain

4.20E-15 0.0032

RB43ORF179c

DnaJ central domain (4 repeats)

0.28

RB43ORF191c

DnaJ central domain (4 repeats)

0.22

RB43ORF205w

Protein of unknown function (DUF1054)

0.43

RB43ORF241c

Zeta toxin

0.36

RB43ORF282w

Phage tail fibre adhesin Gp38

0.0035

RB49ORF044c

DEAD/DEAH box helicase

0.069

RB49ORF046c

Prokaryotic N-terminal methylation motif

0.43

RB49ORF102c

D-alanyl-D-alanine carboxypeptidase

0.0014

RB49ORF143w

Methyltransferase small domain Ribosomal RNA adenine dimethylase

0.0011 0.33

RB49ORF188c

TFIIB zinc-binding

0.22

RB49ORF239c

Protein of unknown function (DUF723)

0.098

RB49ORF244c

CYTH domain

0.0026

RB49ORF260c

Protein of unknown function (DUF1311)

0.2

RB69ORF048c

Thymidylate synthase

0.022

RB69ORF050c

Peptidase family U32

0.00055

RB69ORF053c

Nucleotidyl transferase

0.0022

RB69ORF055c

SIS domain

0.0043

RB69ORF104c

Oleosin

0.42

Putative mobile DNA elements

RB43ORF027c

AP2 domain

0.00071

RB43ORF066w

LAGLIDADG endonuclease

0.15

RB49ORF040c

AP2 domain HNH endonuclease

2.20E-07 0.0042

RB49ORF212c

HNH endonuclease

9.20E-07

Putative nucleotide salvage enzymes

44RRORF072c

Nicotinate phosphoribosyltransferase

9.80E-63

44RRORF083c

NUDIX domain

7.10E-15

Aeh1ORF119c

Nicotinate phosphoribosyltransferase

1.30E-46

Aeh1ORF282c

NUDIX domain Cytidylyltransferase

8.30E-12 5.80E-05

Aeh1ORF330c

NUDIX domain

3.00E-08

RB43ORF138c

NUDIX domain Cytidylyltransferase

1.90E-13 5.30E-05

RB43ORF255w

Nicotinate phosphoribosyltransferase

4.50E-44

  1. Predicted ORF protein sequences were used to search Pfam using HMMer. Matches with E < 0.5 are shown. Multiple matches are shown for ORFs having non-overlapping matches to more than one domain.