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Table 3 Pfam hits for novel ORFs

From: Genetic diversity among five T4-like bacteriophages

ORF Pfam Domain name E value
44RRORF008c Serine hydroxymethyltransferase 9.80E-180
44RRORF084c TM2 domain 3.80E-14
44RRORF093c Glutathionylspermidine synthase 8.30E-109
44RRORF097c Prokaryotic N-terminal methylation motif 3.70E-09
44RRORF098c SPFH domain/Band 7 family 1.10E-06
44RRORF109c Glutaredoxin-like domain (DUF836) 0.016
44RRORF111c Ribonucleotide reductase, small chain 4.00E-06
44RRORF130c Prokaryotic dksA/traR C4-type zinc finger 4.30E-05
44RRORF168c HD domain 0.34
44RRORF232c Domain of unknown function (DUF1732) 0.35
44RRORF234c Sodium:solute symporter family 2.60E-34
44RRORF238c Putative metallopeptidase (SprT family) 0.33
Aeh1ORF004c CYTH domain 0.14
Aeh1ORF010c dUTPase 5.10E-25
Aeh1ORF025c Carbohydrate binding domain 0.4
Aeh1ORF026c Carbohydrate binding domain 0.12
Aeh1ORF040c Prokaryotic N-terminal methylation motif 6.60E-09
Aeh1ORF062c Putative metallopeptidase (SprT family) 0.00035
Aeh1ORF064c SPFH domain/Band 7 family 2.40E-05
Aeh1ORF068c Bacterial transferase hexapeptide (3 repeats) 0.32
Aeh1ORF110c HD domain 0.0078
Aeh1ORF111c UV-endonuclease UvdE 3.60E-20
Aeh1ORF131c Poly(ADP-ribose) polymerase catalytic domain 0.026
Aeh1ORF132c ADP-ribosylglycohydrolase 1.10E-05
Aeh1ORF154c von Willebrand factor type A domain 0.22
Aeh1ORF157c CreA protein 4.40E-09
Aeh1ORF227c RyR domain 0.0054
Aeh1ORF230c Bacterial regulatory proteins, lacI family 0.14
Aeh1ORF245c GatB/Yqey domain 0.17
Aeh1ORF289c Poly A polymerase family 9.00E-31
Aeh1ORF318w Phage T4 tail fibre 8.10E-06
RB43ORF020c LysM domain 1.70E-07
RB43ORF057w DnaJ domain 2.70E-05
RB43ORF119c von Willebrand factor type A domain 0.02
RB43ORF127c C-5 cytosine-specific DNA methylase 1.20E-117
RB43ORF139c SPFH domain/Band 7 family 3.80E-05
RB43ORF157c PhoH-like protein PIN domain 4.20E-15 0.0032
RB43ORF179c DnaJ central domain (4 repeats) 0.28
RB43ORF191c DnaJ central domain (4 repeats) 0.22
RB43ORF205w Protein of unknown function (DUF1054) 0.43
RB43ORF241c Zeta toxin 0.36
RB43ORF282w Phage tail fibre adhesin Gp38 0.0035
RB49ORF044c DEAD/DEAH box helicase 0.069
RB49ORF046c Prokaryotic N-terminal methylation motif 0.43
RB49ORF102c D-alanyl-D-alanine carboxypeptidase 0.0014
RB49ORF143w Methyltransferase small domain Ribosomal RNA adenine dimethylase 0.0011 0.33
RB49ORF188c TFIIB zinc-binding 0.22
RB49ORF239c Protein of unknown function (DUF723) 0.098
RB49ORF244c CYTH domain 0.0026
RB49ORF260c Protein of unknown function (DUF1311) 0.2
RB69ORF048c Thymidylate synthase 0.022
RB69ORF050c Peptidase family U32 0.00055
RB69ORF053c Nucleotidyl transferase 0.0022
RB69ORF055c SIS domain 0.0043
RB69ORF104c Oleosin 0.42
Putative mobile DNA elements
RB43ORF027c AP2 domain 0.00071
RB43ORF066w LAGLIDADG endonuclease 0.15
RB49ORF040c AP2 domain HNH endonuclease 2.20E-07 0.0042
RB49ORF212c HNH endonuclease 9.20E-07
Putative nucleotide salvage enzymes
44RRORF072c Nicotinate phosphoribosyltransferase 9.80E-63
44RRORF083c NUDIX domain 7.10E-15
Aeh1ORF119c Nicotinate phosphoribosyltransferase 1.30E-46
Aeh1ORF282c NUDIX domain Cytidylyltransferase 8.30E-12 5.80E-05
Aeh1ORF330c NUDIX domain 3.00E-08
RB43ORF138c NUDIX domain Cytidylyltransferase 1.90E-13 5.30E-05
RB43ORF255w Nicotinate phosphoribosyltransferase 4.50E-44
  1. Predicted ORF protein sequences were used to search Pfam using HMMer. Matches with E < 0.5 are shown. Multiple matches are shown for ORFs having non-overlapping matches to more than one domain.