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Table 1 Matching Status of Mimivirus core genes (type 1 to 4).

From: Mimivirus relatives in the Sargasso sea

ORF# Definition Best score in nr Best score in DNA viruses Best score in Sargasso Sea Status Reciprocal Best match
L206 Helicase III / VV D5 167-virus 167 214 Best ENV YES
R322 DNA pol (B family) extein 207 167 238 Best ENV YES
L437 A32 virion packaging ATPase 169-virus 169 191 Best ENV YES
L396 VV A18 helicase 200-virus 200 187 -  
L425 Capsid protein 119-virus 117 142 Best ENV complex
R439 Capsid protein 164-virus 159 173 Best ENV complex
R441 Capsid protein 137-virus 147 209 Best ENV complex
R596 E10R-Thiol oxidoreductase 104-virus 105 119 Best ENV YES
R350 VV D6R – helicase 170-virus 170 102 -  
R400 F10L – prot. Kinase 86-virus 86 58 -  
R450 A1L-transcr factor 52-virus 47 65 Best ENV  
R339 TFII-transcr. factor 62 42 66 Best ENV  
L524 MuT-like NTP PP-hydrolase 40 38 39 -  
L323 Myristoylated virion prot. A 43 42 40 -  
R493 PCNA 92 87 154 Best ENV YES
L312 Small Ribonucl. reduct 341 338 310 -  
R313 Large Ribonucl. reduct 766 741 740 -  
R429 PBCV1-A494R-like 152-virus 152 216 Best ENV YES
L37 BroA, KilA-N 123-virus 124 65 -  
R382 mRNA-capping enz. 86 78 166 Best ENV YES
L244 RNA pol. sub 2 (Rbp2) 727 416 508 -  
R501 RNA pol. sub.1 (Rpb1) 805 415 520 -  
R195 ESV128-Glutaredoxin 50 39 49 -  
R622 S/Y phosphatase 75 73 65 -  
R311 CIV193R BIR domain 68 44 51 -  
L65 Virion memb. prot 44 44 - -  
R480 Topoisomerase II 902 717 367 -  
L221 Topoisomerase I bacterial 528 35 516 -  
R194 Topoisomerase I pox-like 188 100 145 -  
L364 SW1/SNF2 helicase 70-virus 70 72 Best ENV YES
L4 N1R/P28 DNA binding prot 123-virus 124 72 -  
L540 Pre-mRNA helicase – splicing 256 136 214 -  
L235 RNA pol subunit5 69 38 50 -  
R354 Lambda-type exonuclease 69-virus 69 154 Best ENV YES
R343 RNAse III 129 112 131 Best ENV YES
R141 GDP mannose 4,6-dehydratase 294 68 252 -  
L258 Thymidine kinase 151 140 124 -  
L271 Ankyrin repeats (66 paralogs) 179 152 192 Best ENV complex
R325 Metal-dependent hydrolase 69-virus 69 105 Best ENV YES
L477 Cathepsin B 226 43 47 -  
R497 Thymidylate synthase 278 242 217 -  
R449 Uncharacterized prot. 69-virus 69 129 Best ENV YES
R303 NAD-dependent DNA ligase 270-virus 270 228 -  
L805 MACRO domain 36 33 - -  
R571 Patatin-like phospholipase 105 80 122 Best ENV YES
R301 Uncharacterized prot. 48-virus 48 65 Best ENV YES