Table 1 Sequence of oligonucleotide primers used for reverse transcription, PCR, and sequencing of SIV.

Reverse Transcription

SIVGSP

TGCTAGGGATTTTTCCTGCYTCGGTTT

Nested PCR

6516

CTCGCTTGCTAACTGCA CTTCTAATCATATCTA

Sph2

GCATGCTATAACACATGCTATTGTAAAAAGTGTT

10505

AAGCAGAAAGGGTCCTAACAGACCAGGGTCTTCA

Molecular Clone Sequencing

For 1

AACTCAGTGCCTACCAGATAA

For 2

TGGCATGGTAGGGATAATAGGA

For 3

ATAAAAGAGGGGTCTTTGTGCT

For 4

AACTGCAGAACCTTGCTATCG

For 5

GTTTGATCCAACTCTAGCCTACAC

For 6

ATGACAGGGTTAAAAAGAGACAAGA

For 7

GAATTGGTTTCTAAATTGGGTAGA

For 8

GAGGCACAAATTCAACAAGAGAAG

For 9

CATACAGAAAACAAAATATGGATGA

For 10

TCCTGGTCCTGAGGTGTAATCCTG

Rev 1

CGCAAGAGTCTCTGTCGCAGAT

Rev 2

AGAGGGTGGGGAAGAGAACACTG

Rev 3

ACTTCTCGATGGCAGTGACC

Rev 4

CCAGACATAATGGAGACTGGTAA

Rev 5

AGAGTACCAAGTTTCATTGTACTC

Rev 6

AGGCAAATAAACATTTTTGCCTAC

Rev 7

GAGCGAAATGCAGTGATATTTATACATCAAG

Population PCR and Sequencing

8877For

ATAGCTGGGATGTGTTTGGC

8534For

GCTGGGATAGTGCAGCAACAGCAAC

8406For

CTACTGGTGGCACCTCAAG

9452Rev

CGAGTATCCATCTTCCAC

9625Rev

CCTACCAAGTCATCATCTTCCTCA

9880Rev

ATCCTCCTGTGCCTCATCTG

10203Rev

ATCAAGAAAGTGGGCGTTCCCGACC