Skip to main content

Table 2 Codon usage differences between regions 1 and 2 and 49 MOCV-1 genes conserved in all poxviruses. The codon usage between regions 1 and 2 was first determined to be statistically equal and was then used to compare to the codon usage of 49 MOCV-1 genes that are conserved in all poxviruses. Student's t-test was used to compare codon usage with null hypothesis assuming codon usage was equal.

From: Host-derived pathogenicity islands in poxviruses

Amino Acid

Fraction of codons with different usage

Codons that have statistically different usage*

Phe

2/2

UUU, UUC

Tyr

2/2

UAU, UAC

His

2/2

CAU, CAC

Gln

2/2

CAA, CAG

Asn

2/2

AAU, AAC

Lys

2/2

AAA, AAG

Asp

2/2

GAU, GAC

Glu

2/2

GAA, GAG

Cys

2/2

UGU, UGC

Leu

4/6

UUA, UUG, CUU, CUG

Ile

1/3

AUC

Val

2/4

GUU, GUG

Ser

2/6

UCU, AGC

Pro

3/4

CCU, CCC, CCA

Thr

2/4

ACU, ACA

Ala

2/4

GCU, GCA

Arg

5/6

CGU, CGC, CGA, CGG, AGA

Gly

3/4

GGU, GGC, GGA

Stop

1/3

UGA

  1. *Codon usage was considered different if p-value < 0.05