Table 2 Nucleotide sequence identities (percentages) of the DNA-A full-length of cassava mosaic geminiviruses from Tanzania and other geminiviruses from Africa and the Indian sub-continent. Values above 89% are in bold and names of isolates from Tanzania are in bold.
Virus Isolate | ACMV-[TZ] | EACMCV-[TZ1] | EACMCV-[TZ7] | EACMV-[KE/TZT] | EACMV-[KE/TZM] | EACMV-[TZ/YV] | EACMV-UG2 [TZ10] |
|---|---|---|---|---|---|---|---|
ACMV-[CM] | 95 | 68 | 68 | 70 | 70 | 69 | 73 |
ACMV-[CM/DO2] | 95 | 68 | 68 | 70 | 70 | 69 | 73 |
ACMV-[IC] | 96 | 68 | 68 | 70 | 71 | 70 | 73 |
ACMV-[KE] | 96 | 68 | 68 | 70 | 70 | 70 | 73 |
ACMV-[NG] | 95 | 68 | 68 | 70 | 70 | 70 | 73 |
ACMV-[NG/Ogo] | 96 | 68 | 68 | 70 | 70 | 70 | 73 |
ACMV-UGMld | 97 | 68 | 68 | 70 | 71 | 70 | 73 |
ACMV-UGSVr | 96 | 68 | 68 | 70 | 71 | 70 | 74 |
ACMV-[TZ] | - | 68 | 68 | 70 | 70 | 70 | 73 |
EACMCV-[CM] | 67 | 90 | 89 | 87 | 87 | 85 | 84 |
EACMCV-[CI] | 67 | 90 | 90 | 88 | 87 | 86 | 85 |
EACMCV-[TZ1] | 68 | - | 96 | 88 | 88 | 87 | 85 |
EACMCV-[TZ7] | 68 | 96 | - | 88 | 88 | 87 | 85 |
EACMMV-[K] | 71 | 81 | 81 | 87 | 88 | 86 | 87 |
EACMMV-[MH] | 71 | 81 | 81 | 87 | 88 | 86 | 88 |
EACMV-[KE/K2B] | 70 | 88 | 88 | 97 | 96 | 94 | 92 |
EACMV-[TZ] | 69 | 88 | 88 | 94 | 94 | 95 | 91 |
EACMV-[KE/TZT] | 70 | 88 | 88 | - | 95 | 93 | 92 |
EACMV-[KE/TZM] | 70 | 88 | 88 | 96 | - | 94 | 92 |
EACMV-[TZ/YV] | 70 | 87 | 87 | 94 | 93 | - | 90 |
EACMV-UG2 | 73 | 85 | 85 | 92 | 92 | 92 | 98 |
EACMV-UG2Mld | 73 | 86 | 86 | 93 | 92 | 92 | 99 |
EACMV-UG2Svr | 73 | 86 | 86 | 93 | 92 | 92 | 99 |
EACMV-UG2 [TZ10] | 73 | 85 | 85 | 92 | 92 | 91 | - |
EACMZV-[ZB] | 72 | 80 | 80 | 86 | 86 | 86 | 83 |
EACMZV-[KE/Kil] | 72 | 79 | 79 | 86 | 86 | 85 | 83 |
SACMV-[ZA] | 74 | 73 | 73 | 80 | 80 | 79 | 80 |
SACMV-[ZW] | 74 | 73 | 73 | 80 | 80 | 80 | 80 |
SACMV-[M12] | 74 | 73 | 73 | 80 | 80 | 80 | 80 |
SLCMV-[Col] | 73 | 67 | 67 | 67 | 67 | 67 | 67 |
TGMV-[Com] | 58 | 59 | 59 | 59 | 59 | 59 | 59 |