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Table 3 Gammaherpesviruses identified and/or characterized using CODEHOP-based PCR assays targeting the herpesvirus DNA polymerase (see legend to Table 2)

From: CODEHOP-mediated PCR – A powerful technique for the identification and characterization of viral genomes

Virus species1 Abbrev.1 Host Strain Assay Accession (#aa) Reference
Gammaherpesvirus-1       
   Bovine lymphotrophic HV BLHV Cow   DFA-IYG4 AAC59451 (160aa) [36]
   Callitrichine HV-3 CalHV3 Marmoset   TGV-IYG AAF05882 (58aa) Unpublished
   Leoporid HV-2 LeHV2 Rabbit   TGV-IYG AAC55655 (54aa) [8]
   Rhesus lymphocryptovirus-1 (cercopithecine HV-15) MmuLCV1 Macaque mulatta   DFASA-GDTD1B TGV-IYG This study AF091053 This study Unpublished
   Rhesus lymphocryptovirus-2 MmuLCV2 Macaque mulatta   DFASA-GDTD1B   This study
   HV papio (cercopithecine HV-12) HVP Baboon   TGV-IYG AAF05878 (58aa) Unpublished
   Ovine HV 2 OHV2 Sheep   DFA-IYG AAC59455 (161aa) [36]
   Porcine lymphotrophic virus-1a PLHV1a Pig 56 DFA-IYG AAD26258 (155aa) [40]
   Porcine lymphotrophic virus-1b PLHV1b Pig 68 DFA-IYG AAD26257 (155aa) [40]
   Saimiriine HV-3 SaHV3 S. American squirrel monkey   TGV-IYG AAF98285 (57aa) Unpublished
   Zalophus californianus HV ZcaHV Sea lion   TGV-IYG AAF07188 (55aa) Unpublished
Gammaherpesvirus-2       
   Alcelaphine HV-1 AlHV1 Wildebeest   TGV-IYG AAC59452 (58aa) [36]
   Alcelaphine HV-2 AlHV2 Hartebeest   TGV-IYG AAG21352 (58aa) Unpublished
   Caprine HV-2 CapHV2 Goat   TGV-IYG AAG21351 (59aa) Unpublished
   Caprine lymphotropic HV CapLHV Goat   TGV-IYG AAG10783 (58aa) Unpublished
   Deer malignant catarrhal fever virus DMCFV Deer   TGV-IYG AAD56945 (59aa) [41]
   Ateline HV-2 AtHV2 S. American spider monkey   TGV-IYG AAC55644 (55aa) [8]
   Bovine HV-4 BHV4 Cow   DFA-IYG AAC59454 (156aa) [36]
   Callitrichine HV-1 CalHV1 Marmoset   TGV-IYG AAC55645 (55aa) [8]
   Chlorocebus rhadinovirus-1 ChRV1 African green monkey Z8 QAHNA-GDTD1B5 CAB61753 (151aa) [19]
   Chlorocebus rhadinovirus-2 ChRV2 African green monkey L1 QAHNA-GDTD1B CAB61754 (151aa) [19]
   Equine HV-2 EHV2 Horse   TGV-IYG AAC55648 (55aa) [8]
   Equine HV-5 EHV5 Horse   TGV-IYG6 AAD30141 (56aa) [17]
   Gorilla rhadinoherpesvirus 1 gorRHV1 Gorilla GorGabOmo DFASA-GDTD1B AAG23218 (158aa) [24]
   Kaposi's sarcoma-associated HV (HHV8) KSHV Human KS187 DFASA-GDTD1B AAC57974 (151aa) [9]
[10]
   Macaque fascicularis rhadinovirus-2 (Macaque fascicularis gamma virus) MfaRV2 Macaque fascicularis   DFASA-GDTD1B AAF23082 (158aa) [42]
   Macaque nemestrina rhadinovirus-2 MneRV2 Macaque nemestrina Mne442N DFASA-GDTD1B AAF81664 (158aa) [10]
   Mandrill rhadinoherpesvirus-1 MndRHV1 Mandrill sphinx Mnd15 DFASA-GDTD1B AAG39066 (158aa) [22]
   Mandrill rhadinoherpesvirus-2 MndlRHV2 Mandrill leucophaeus Mnd205 DFASA-GDTD1B AAG39061 (158aa) [22]
   Mandrill rhadinoherpesvirus-2 MndsRHV2 Mandrill sphinx Mnd13 DFASA-GDTD1B AAG39060 (158aa) [22]
   Pan troglodytes rhadinoherpesvirus-1a panRHV1a Chimpanzee PanCamDja DFASA-GDTD1B AAG23140 (158aa) [24]
   Pan troglodytes rhadinoherpesvirus-1b panRHV1b Chimpanzee PanCamEko DFASA-GDTD1B AAG23142 (158aa) [24]
   Retroperitoneal fibromatosis HVMm RFHVMm Macaque mulatta MmuYN91-224 QAHNA-GDTD1B AAC57976 (151aa) [9]
[10]
   Retroperitoneal fibromatosis HVMn RFHVMn Macaque nemestrina Mne442N DFASA-GDTD1B AAF81662 (158aa) [9]
[10]
   Rhesus rhadinovirus (Macaque mulatta gamma virus) RRV Macaque mulatta   DFASA-GDTD1B AAF23083 (158aa) [42]
   Tapirus terrestris HV TteHV Tapir   TGV-IYG6 AAD30142 (55aa) [17]
   Equus somalicus HV EsoHV Wild ass   TGV-IYG6 AAD30143 (57aa) [17]
   Equus zebra HV EzeHV Zebra   TGV-IYG6 AAD30144 (55aa) [17]