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Figure 1 | Virology Journal

Figure 1

From: SearchSmallRNA: a graphical interface tool for the assemblage of viral genomes using small RNA libraries data

Figure 1

Reads selection. Reads are compared to the reference genome. Reads that match 100% with it are selected for further mapping (panel superior). However, reads that do not match 100% the reference genome are divide in three segments and each of them are compared to the reference genome. If one of these segments matches it, it will be compared with the three segments by Hamming distance and selected as positive accordingly to the allowed mismatched previously selected by the user. The user can choose to perform the analysis with no mismatch or allowing up to 3 mismatches to the reference genome.

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