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Table 1 Overview of the sequence reads and mapped SEOV sequences obtained using the Illumina NGS platform for sample preparations S1-S3

From: Detection and genetic characterization of Seoul Virus from commensal brown rats in France

Illumina Sample Prep Read data Reads from SEOV Segments Reads from SEOV % reads from SEOV
Total reads PF PF aligned % PF aligned % Ribosomal Viral reads % viral reads Segment S Segment M Segment L
S1 91,661,298 75,522,658 66,580,460 88.16% 0.99% 255,911 0.34% 12,675 30,211 13,617 56,503 22%
S2 83,920,361 59,434,134 42,659,876 71.78% 30.95% 434,756 0.73% 10,610 37,111 43,345 91,066 20.90%
S3 62,479,875 46,105,731 21,974,935 47.66% 21.55% 1,016,600 2.20% 112,152 363,008 381,521 856,681 84.29%
  1. PF: Pass Filter (Quality Check). PF Aligned – sequences aligned with rat genome (see methods).