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Table 3 Primers for specific and long-distance PCR

From: High prevalence and diversity of species D adenoviruses (HAdV-D) in human populations of four Sub-Saharan countries

PCR

Gene

HAdV species

1st-round primer (5′-3′)

2nd-round primer (5′-3′)

3rd-round primer (5′-3′)

Annealing temp. (C°)

Fragment size

Sense

Anti-sense

Sense

Anti-sense

Sense

Anti-sense

Generic PCR

Hexon

HAdV-D

AAGGCCGTCA

GTGCGGCTGG

ACAACTCGGGCTTCACCGGC

GGCTGGTGCA

None

None

63

322 bp

CCCTGCCCTT

TGCACTCTGA

CTCTGACCACG

Long distance PCR

PVII-Hexon

HAdV-D

CGCCCAGCAA

GTGCGGCTGG

GGCAGGACTCGCAGACGAGC

GGTGGGCTCA

GCGCGGAAAC

GGGATGCGCC

60

4.8 kb

   

TAACACCGGC

TGCACTCTGA

 

TCCATGGGGT

GTGTACTGGGT

ACATGACCCT