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Table 2 Comparison of the minimum genetic distance values of HAdV-D types

From: High prevalence and diversity of species D adenoviruses (HAdV-D) in human populations of four Sub-Saharan countries

Sample Observed genetic distances Estimated genetic distances
pV-hexon gene Hypervariable loops pV-hexon gene Hypervariable loops
minGD study n minGD Genbank % minGD Genbank minGD study n minGD Genbank % minGD Genbank minGD study n minGD Genbank % minGD Genbank minGD study n minGD Genbank % minGD Genbank
< < < < < < < <
minGD study minGD study minGD study minGD study minGD study minGD study minGD study minGD study
Hu4751_CI 0.02 4 9.30 0.00 6 13.95 0.02 4 9.30 0.00 0 0.00
Hu4806_CI 0.02 13 30.23 0.03 11 25.58 0.02 10 23.26 0.02 11 25.58
Hu4719_CI 0.02 13 30.23 0.04 13 30.23 0.02 10 23.26 0.04 11 25.58
Hu4787_CI 0.03 15 34.88 0.06 18 41.86 0.03 13 30.23 0.07 13 30.23
Hu4152_DRC 0.03 16 37.21 0.04 13 30.23 0.03 13 30.23 0.06 13 30.23
Hu4813_CI 0.03 16 37.21 0.02 10 23.26 0.03 13 30.23 0.01 11 25.58
Hu4882_CI 0.03 16 37.21 0.07 18 41.86 0.04 17 39.53 0.11 19 44.19
Hu4746_CI 0.03 16 37.21 0.07 18 41.86 0.03 16 37.21 0.25 22 51.16
Hu4109_DRC 0.04 22 51.16 0.12 20 46.51 0.05 22 51.16 0.26 22 51.16
Hu4108_DRC 0.05 26 60.47 0.11 20 46.51 0.05 22 51.16 0.13 20 46.51
Hu4564_UG 0.05 31 72.09 0.12 20 46.51 0.06 29 67.44 0.29 22 51.16
Hu4214_DRC 0.06 37 86.05 0.17 33 76.74 0.07 34 79.07 0.67 35 81.40
Hu4555_UG 0.06 37 86.05 0.16 26 60.47 0.07 37 86.05 0.50 31 72.09
  1. minGD study: minimum genetic distance determined for the 13 HAdV-D sequences of this study in relation to 43 HAdV-D types from Genbank; minGD Genbank: minimum genetic distance determined for every HAdV-D type from Genbank in relation to the other 42Genbank types; CI: Côte d`Ivoire; DRC: Democratic Republic of the Congo; UG: Uganda.
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