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Table 3 Predicted promoter sequences of AP5

From: Complete genome sequence of bacteriophage vB_YenP_AP5 which infects Yersinia enterocoliticaof serotype O:3

Name

Promoter sequence

Number of mismatches†

Transcription

   

Beginning

End

Ï•Gene 0.3

AATTACCCTCACTAAAGGGAAT

4

475

496

Ï•Gene 1.05

ATTAACCCTCACTAACGGGAGA

1

5970

5991

Ï•Gene 1.1

GTTAACCCTCACTAACGGGAGA

2

6312

6333

Ï•Gene 1.3

AATAACCCTAACTAACAGGAGA

4

6823

6844

Ï•Gene 1.6

ATTAACCCTCACTAACAGGAGA

2

8015

8036

Ï•Gene 2.5

AATTACCCTCACTAAAGGGAAC

4

9227

9248

Ï•Gene 4

ATTAACACTCACTAAAGGGATG

3

11000

11021

Ï•Gene 4.3

ATTAACCCTCACTAACGGGAAC

3

12818

12839

Ï•Gene 6.5

ATTAACCCTCACTAAAGGGAAG

2

17277

17298

Ï•Gene 9

AATAACCATCACTAAATGGAGA

3

19816

19837

Ï•Gene 10A

ATTAACCCTCACTAAAGGGAGA

0

20851

20872

Ï•Gene 13

ATTAACCCTCACTAAAGGGAGA

0

25303

25324

Ï•Gene 17

ATAAACCCTCACTAAAGGGAGA

0

32975

32996

Ï•Gene 19.5

ATTAACCCTCACTAAAGGGAGA

0

37842

37863

 

Consensus sequence

   

AP5

ATTAACCCTCACTAAAGGGAGA

   

φYeO3-12

ATTAACCCTCACTAAAGGGAGA

   

T3

ATTAACCCTCACTAAAGGGAGA

   

T7

TAATACGACTCACTATAGGGAG

   
  1. †Number of mismatches compared to AP5 consensus sequence.
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Virology Journal

ISSN: 1743-422X