From: Prediction of T-cell epitopes of hepatitis C virus genotype 5a
Gene | Epitope sequencea | Genotype of epitope | HLA I allele typesb | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 |  |  | HLA-A | HLA-B | HLA-C | ||||||||
 |  |  | HLA-A*01:01 | HLA-A*02:01 | HLA-A*30:01 | HLA-A*30:02 | HLA-B*07:02 | HLA-B*08:01 | HLA-B*35:01 | HLA-C*04:01 | HLA-C*06:02 | HLA-C*07:01 | HLA-C*07:02 |
E2 | |||||||||||||
684 | 1a, 1b, 3, 4,5a, 6 | + | +++ | + | + | + | + | + | + | + | + | + | |
 | ALSTGLLHL | 2 | + | +++ | + | + | + | + | + | + | + | + | + |
NS2 | |||||||||||||
1025 | LLAPITAYA | 1a, 3, 4, 5a | + | +++ | + | ++ | + | + | + | + | + | + | + |
 | LLAPITAYT | 2 | + | +++ | + | ++ | + | + | + | + | + | + | + |
NS3 | |||||||||||||
1032 | YAQQTRGVL | 5a | + | + | + | + | +++ | + | + | + | + | + | + |
 | YAQQTRGLL | 1a, 2 | + | + | + | + | ++ | + | + | + | + | + | + |
 | YSQQTRGLL | 1b | + | + | + | + | + | + | + | + | + | + | + |
 | YAQQTRGLV | 6 | + | + | + | + | + | + | + | + | + | + | + |
1242 | AAYAAQGYK | 1a, 1b, 4, 5a | + | + | +++ | + | + | + | + | + | + | + | + |
 | AAYASQGYK | 2 | + | + | +++ | + | + | + | + | + | + | + | + |
1264 | FGAYMSKAY | 5a | + | + | + | + | + | + | +++ | + | + | + | + |
 | FGAYMSKAH | 1a, 1b, 2 | + | + | + | + | + | + | + | + | + | + | + |
1359 | 1a, 1b, 5a | + | + | + | + | ++ | + | +++ | + | + | + | + | |
 | HSNIEEVAL | 2, 3, 4 | + | + | + | + | + | + | + | + | + | + | + |
 | HPNITETAL | 6 | + | + | + | + | +++ | + | +++ | + | + | + | + |
1367 | LPSEGEIPF | 5a | + | + | + | + | ++ | Â | +++ | + | + | + | + |
 | LGHEGEIPF | 2 | + | + | + | + | + | + | ++ | + | + | + | + |
 | LGSEGEIPF | 3 | + | + | + | + | + | + | ++ | + | + | + | + |
 | LPTTGEIPF | 4, 6 | + | + | + | + | ++ |  | +++ | + | + | + | + |
1585 | 1a, 1b, 4, 5a, 6 | + | +++ | + | + | + | + | + | + | + | + | + | |
 | YLTAYQATV | 2, 3 | + | +++ | + | + | + | + | + | + | + | + | + |
NS5A | |||||||||||||
1927 | NHVSPTHYV | 1a, 1b, 3, 4,5a, 6 | + | + | + | + | + | + | + | + | ++ | +++ | + |
 | NHVAPTHYV | 2 | + | + | + | + | + | + | + | + | + | ++ | + |
2285 | LPVWARPGY | 5a | + | + | + | + | + | + | +++ | + | + | + | + |
 | LPIWARPDY | 1a, 3, 4, 6 | + | + | + | + | + | + | +++ | + | + | + | + |
 | LPAWARPDY | 2 | + | + | + | + | + | + | +++ | + | + | + | + |
NS5B | |||||||||||||
2696 | YRRCRASGV | 1a, 1b, 2, 3, 5a | + | + | + | + | + | ++ | + | + | ++ | +++ | ++ |
2763 | MTRYSAPPG | 1a, 1b, 2, 3, 4, 5a, 6 | + | + | +++ | + | + | + | + | + | + | + | + |
2889 | LSAFSLHSY#[40] | 1a, 1b, 5a | +++ | + | + | +++ | + | + | ++ | + | + | + | + |
 | LSAFTLHSY | 3 | +++ | + | + | +++ | + | + | ++ | + | + | + | + |
 | LSAFTLHGY | 4 | +++ | + | + | +++ | + | + | + | + | + | + | + |