Figure 4

Maximum likelihood midpoint-rooted phylogeny of SLCV DNA-A both isolated in this study and from GenBank, created in PAUP* using a Tamura-Nei nucleotide substitution model with a gamma distribution of site heterogeneity. The locations from which various GenBank sequences were isolated, where available, were obtained from the GenBank file or from the associated publications. Sequences from Egypt (EG) are shown in red, from Israel (IL) in blue, Jordan (JO) in green, Lebanon (LB) in yellow and the regions of Palestine governed by the Palestinian Authority (PA) in purple. Sequences from all other countries are shown in black, with their two-letter country code preceding the accession number. Bootstrap support of ≥85% from both PAUP* and RaxML trees is shown by a solid circle; an open circle denotes ≥85% support from only RaxML. The closely related Rhynchosia golden mosaic Sinaloa virus (RhMSV) is also included, and serves as an outgroup.