Table 2 Reference HEV sequences used in the phylogenetic analyses
From: Genetic heterogeneity of swine hepatitis E virus isolates from Yunnan province, China in 2011–2012
Genotype | Strain | Host | Country | Accession No. |
|---|---|---|---|---|
I | E11-Ban10 | Human | Bangladesh | AB720034 |
W2-1 | Human | China | JQ655734 | |
C1 | Human | China:Xinjiang | D11092 | |
HEVNE8L | Human | Myanmar | D10330 | |
TK15/92 | Human | Nepal | AF051830 | |
pSK-HEV-2 | Human | USA | AF444002 | |
II | M | Human | Mexico | M74506 |
III | Arkell | swine | Canada | AY115488 |
SAAS-JDY5 | swine | China:Shanghai | FJ527832 | |
WB1-Aichi | wild boar | Japan: Aichi | DQ079628 | |
JMNG-Oki02C | mongoose | Japan: Okinawa | AB236320 | |
JMY-Haw | Human | Japan: Sapporo | AB074920 | |
SwJ570 | swine | Japan:Tochigi | AB073912 | |
JRA1 | Human | Japan:Tokyo | AP003430 | |
Osh-205 | swine | Kyrgyzstan: Osh | AF455784 | |
Kernow-C1 | Human | United Kingdom | JQ679014 | |
pSHEV-3 | swine | USA | AY575859 | |
HEV-US1 | Human | USA | AF060668 | |
HEV_RKI | Human | Germany | FJ956757 | |
Thai-swHEV07 | Swine | Thailand | EU375463 | |
IV | JYI-ChiSai01C | Human | China:Shanghai | AB197674 |
SS19 | swine | China:Guangdong | JX855794 | |
swGX40 | swine | China:Guangxi | EU676172 | |
Ch-S-1 | swine | China:Jilin | EF077630 | |
CH-YT-1 | Human | China:Shangdong | KC163335 | |
CH-YT-HEV02 | Human | China:Shangdong | KC492825 | |
TW6196E | Human | China:Taiwan | HQ634346 | |
IND-SW-00-01 | Swine | India | AY723745 | |
HE-JA2 | Human | Japan: Hokkaido | AB220974 | |
JTC-Kit-FH04L | Human | Japan:Hokkaido | AB291959 | |
JYK-Tok03C | Human | Japan:Tokyo | AB291964 | |
swKOR-1 | swine | South Korea | FJ426403 | |
KNIH-hHEV4 | Human | South Korea | FJ763142 | |
JKK-Sap | Human | Japan: Sapporo | AB074917 | |
W3 | Human | China | JQ655735 | |
CCC220 | Human | China:Jilin | AB108537 | |
HEV-ZJ1 | Swine | China:Jiangsu | JQ993308 | |
swCH189 | Swine | China: Gansu | FJ610232 | |
Avian | USA | AY535004 |